Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10a16
         (473 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z22180-6|CAE17862.1|   77|Caenorhabditis elegans Hypothetical pr...    51   5e-07
Z34801-2|CAD82919.1|  884|Caenorhabditis elegans Hypothetical pr...    30   0.74 
Z34801-1|CAA84330.1|  860|Caenorhabditis elegans Hypothetical pr...    30   0.74 
Z77665-4|CAB01222.1|  126|Caenorhabditis elegans Hypothetical pr...    27   5.2  
AF098989-3|AAK18953.2|  569|Caenorhabditis elegans Hypothetical ...    27   5.2  
Z66567-4|CAA91493.2|  618|Caenorhabditis elegans Hypothetical pr...    27   6.9  
U40799-2|AAA81480.1|  712|Caenorhabditis elegans Hypothetical pr...    27   6.9  
AF039039-1|AAB94180.2|  653|Caenorhabditis elegans Hypothetical ...    27   9.1  

>Z22180-6|CAE17862.1|   77|Caenorhabditis elegans Hypothetical
           protein K11H3.6 protein.
          Length = 77

 Score = 50.8 bits (116), Expect = 5e-07
 Identities = 18/42 (42%), Positives = 31/42 (73%)
 Frame = -3

Query: 237 PLVTQISGIKIKGRVRRRCRSCYFVFRDERVYIMCSKFPRHK 112
           P+  + +G K+K R++ RCRSCYF+  + R+++ C++ PRHK
Sbjct: 25  PMCQETAGFKVKSRLKLRCRSCYFLRVEGRLHVECNENPRHK 66


>Z34801-2|CAD82919.1|  884|Caenorhabditis elegans Hypothetical
           protein F59A2.1b protein.
          Length = 884

 Score = 30.3 bits (65), Expect = 0.74
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -3

Query: 165 VFRDERVYIMCSKFPRHKQMSMKPKPHNTWILT 67
           V R E+V+ +C+ F   K M + PKP+   +LT
Sbjct: 810 VMRREQVHKLCANFRIEKSMKLSPKPNLPNVLT 842


>Z34801-1|CAA84330.1|  860|Caenorhabditis elegans Hypothetical
           protein F59A2.1a protein.
          Length = 860

 Score = 30.3 bits (65), Expect = 0.74
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -3

Query: 165 VFRDERVYIMCSKFPRHKQMSMKPKPHNTWILT 67
           V R E+V+ +C+ F   K M + PKP+   +LT
Sbjct: 786 VMRREQVHKLCANFRIEKSMKLSPKPNLPNVLT 818


>Z77665-4|CAB01222.1|  126|Caenorhabditis elegans Hypothetical
           protein K02E11.5 protein.
          Length = 126

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = +1

Query: 196 ATFNFYTRNLRD*WDHRFYEICNRRLRNPI*YW 294
           A +    +N +D W+   Y +CN + +    YW
Sbjct: 42  ANYRREIQNEKDVWEEHIYRVCNGKNKKTCGYW 74


>AF098989-3|AAK18953.2|  569|Caenorhabditis elegans Hypothetical
           protein F47G6.2 protein.
          Length = 569

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -3

Query: 228 TQISGIKIKGRVRRRCRSCYFVFRDERVYIMCSKFPR 118
           TQ    K+K  ++  CRS +FV  D  V+     FPR
Sbjct: 513 TQFHAAKLKDELKSMCRSHHFVAPD--VFAFVDDFPR 547


>Z66567-4|CAA91493.2|  618|Caenorhabditis elegans Hypothetical
           protein ZK455.4 protein.
          Length = 618

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 10/59 (16%)
 Frame = -3

Query: 183 CRSCYFVFRDERVYIM----------CSKFPRHKQMSMKPKPHNTWILTQASQSPVRPW 37
           C++  + F+DE V+++          C  F  +   S KP  H   I     + P++PW
Sbjct: 114 CKNIIYAFKDEVVFVLERSVFTPEEICGAFIANCGHSDKPLTHMWNITIPGGKPPIKPW 172


>U40799-2|AAA81480.1|  712|Caenorhabditis elegans Hypothetical
           protein F42C5.4 protein.
          Length = 712

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 10/35 (28%), Positives = 16/35 (45%)
 Frame = -3

Query: 183 CRSCYFVFRDERVYIMCSKFPRHKQMSMKPKPHNT 79
           C SC     +  + + C    +HK +  KPK  N+
Sbjct: 500 CLSCSSYSEELEICVFCEFLDKHKALKTKPKIENS 534


>AF039039-1|AAB94180.2|  653|Caenorhabditis elegans Hypothetical
           protein T08B1.6 protein.
          Length = 653

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -3

Query: 120 RHKQMSMKPKPHNTWILTQASQSPVRP 40
           R+K+  +KPKP  T+++   S +  RP
Sbjct: 205 RNKRNPVKPKPETTYVICHTSGTTGRP 231


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,605,366
Number of Sequences: 27780
Number of extensions: 211134
Number of successful extensions: 426
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 421
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 425
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 860942358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)