Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10a15
(862 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom... 30 0.37
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|... 29 1.1
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb... 27 2.6
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B... 26 6.0
SPAC13A11.03 |mcp7|mug32|meiosis specific coiled-coil protein Mc... 26 6.0
SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ... 26 7.9
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz... 26 7.9
SPBC2F12.08c |ceg1|pce1|mRNA guanylyltransferase Ceg1|Schizosacc... 26 7.9
SPBC19G7.15 |nup44||nucleoporin Nup44|Schizosaccharomyces pombe|... 26 7.9
>SPBC887.09c |||leucine-rich repeat protein Sog2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 886
Score = 30.3 bits (65), Expect = 0.37
Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Frame = -1
Query: 376 LSQANSNSDGTFSGSN-CNTATRPVDLNEKNE-HLERYFRSA 257
LS+ N NS+GT SN + T P LN+ N+ HL+ R A
Sbjct: 264 LSKTNENSEGTLYDSNVAHGCTHPPSLNQLNKFHLDASPRQA 305
>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
3|||Manual
Length = 828
Score = 28.7 bits (61), Expect = 1.1
Identities = 11/22 (50%), Positives = 18/22 (81%)
Frame = -1
Query: 469 MNSSRASTFSHGLDNISLMSMN 404
+NSS+ ST +HG D+I+++S N
Sbjct: 695 INSSQPSTINHGTDHINIVSEN 716
>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 2386
Score = 27.5 bits (58), Expect = 2.6
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = +3
Query: 192 NYFFASKKNNPLDPQFRSLHISALRKYLSKCSFFSFRS 305
N+ ++ N ++ +RSL I +L+K LSK + SF +
Sbjct: 1512 NHEYSKMLNLGIEASWRSLSIDSLKKCLSKSNLESFEA 1549
>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
Brl1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 692
Score = 26.2 bits (55), Expect = 6.0
Identities = 23/88 (26%), Positives = 41/88 (46%)
Frame = -1
Query: 616 VKRKSVLLNETINSLDLAFGRLKKCRLSNGVGRASTPGSPTIRHRNDILMNSSRASTFSH 437
+KRK E +NS +L + R+++ +L++ R+ + I + + +
Sbjct: 177 LKRKLSFFREALNSAELEWKRVQQDQLTSASERSIENIADDIPASEPKAILENGEGCLND 236
Query: 436 GLDNISLMSMNFSHYELMRNLSQANSNS 353
DNIS + NF + +L QAN NS
Sbjct: 237 N-DNISKLKNNF---QSQADLMQANINS 260
>SPAC13A11.03 |mcp7|mug32|meiosis specific coiled-coil protein
Mcp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 210
Score = 26.2 bits (55), Expect = 6.0
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -1
Query: 334 SNCNTATRPVDLNEKNEHLERYFRSAEIWSDR 239
SN N P KNE+ ++Y +A +W+D+
Sbjct: 144 SNLNHCN-PETFELKNENTKKYMEAANLWTDQ 174
>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 317
Score = 25.8 bits (54), Expect = 7.9
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = +3
Query: 498 GLPGVLARPTPFDSLHFFSLPNAKSKELMVSFSNTDL 608
GLP L P+ S+ FF+ K K FSN DL
Sbjct: 192 GLPATLLNVVPYVSICFFTFEFCKQK----FFSNADL 224
>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 873
Score = 25.8 bits (54), Expect = 7.9
Identities = 33/161 (20%), Positives = 54/161 (33%), Gaps = 2/161 (1%)
Frame = -1
Query: 730 QYLYEIDMENQTLNNEKRFINKARSHNTGPSQFVRNEPVKRKSVLLNETINSLDLAFGRL 551
+Y E D E + + R + NEP + ++ +T N+
Sbjct: 591 EYYGENDFEEDEVYRDDRHYENEHDEYDPNLIYYDNEPTEENRLVFEDTNNTFIDTDSDD 650
Query: 550 KKCRLSNGVGRA--STPGSPTIRHRNDILMNSSRASTFSHGLDNISLMSMNFSHYELMRN 377
S + A S S ++ N+ +SS S FSH + S+N S
Sbjct: 651 SNADESQFLEYANDSPNSSESLESLNNQSYSSSPYSVFSHPPPYMGRQSLNDSPQTSDFK 710
Query: 376 LSQANSNSDGTFSGSNCNTATRPVDLNEKNEHLERYFRSAE 254
S N +S S T P N+ R +S++
Sbjct: 711 ASNLNDSSSNVHSIFQTRETTSPSVQNKTPTKYHRELKSSK 751
>SPBC2F12.08c |ceg1|pce1|mRNA guanylyltransferase
Ceg1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 402
Score = 25.8 bits (54), Expect = 7.9
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = -1
Query: 553 LKKCRLSNGVGRASTPGSPTIRHRNDILMNSSRASTFSHGLD 428
LKK L +G+ + P +RH ND L+ + + + G D
Sbjct: 194 LKKMELGHGILKLFNEVIPRLRHGNDGLIFTCTETPYVSGTD 235
>SPBC19G7.15 |nup44||nucleoporin Nup44|Schizosaccharomyces pombe|chr
2|||Manual
Length = 403
Score = 25.8 bits (54), Expect = 7.9
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -1
Query: 364 NSNSDGTFSGSNCNTATRPVD 302
NSN+ FS S N T+PVD
Sbjct: 101 NSNTQPLFSWSTVNNPTKPVD 121
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,526,653
Number of Sequences: 5004
Number of extensions: 74544
Number of successful extensions: 180
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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