Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10a15
         (862 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0476 - 17922072-17922469,17922546-17923241,17923405-179235...    32   0.68 
01_07_0298 - 42586007-42589742,42590167-42590280,42590295-425904...    31   1.6  
01_06_0770 - 31844132-31844749                                         29   3.6  
08_01_0098 - 700443-700660,701112-701268,701586-701678,701763-70...    28   8.3  

>09_04_0476 -
           17922072-17922469,17922546-17923241,17923405-17923569,
           17923670-17924105,17924314-17924739
          Length = 706

 Score = 31.9 bits (69), Expect = 0.68
 Identities = 23/101 (22%), Positives = 47/101 (46%), Gaps = 11/101 (10%)
 Frame = -1

Query: 499 PTIRHRNDILMNSSRAST---FSHGLDNISLMSMNFSHYELMRNLSQ--------ANSNS 353
           P  +  ND ++  +  +T   FS+  + I ++  N   Y  MR +S         ++  +
Sbjct: 99  PVTKQMNDSMVGQNFTNTPYRFSYEDNKIFVIGCNTMAY--MRGVSYVIGCLSTCSDEPT 156

Query: 352 DGTFSGSNCNTATRPVDLNEKNEHLERYFRSAEIWSDRNCG 230
           +G+ SG+ C +   P DL     +  + + +++IW+   CG
Sbjct: 157 NGSCSGAGCCSVDVPPDLGYVEAYFNKDYNTSQIWNYSRCG 197


>01_07_0298 - 42586007-42589742,42590167-42590280,42590295-42590437,
            42591174-42591347
          Length = 1388

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
 Frame = -1

Query: 496  TIRHRNDILMNSSRASTFSHG-LDNISLMSMNFSHYELMRNLSQANSNSDGTFSGSNCN- 323
            T +   D+++ + +A   S G ++N++     F +YE +   S A ++ DGT SG  C+ 
Sbjct: 1214 TSQRVTDVVLMAFQACACSQGCMNNLTFGDDTFGYYETIGGGSGAGASWDGT-SGVQCHM 1272

Query: 322  TATRPVD 302
            T TR  D
Sbjct: 1273 TNTRMTD 1279


>01_06_0770 - 31844132-31844749
          Length = 205

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -1

Query: 190 PCPQMKSRDERLCKFQNF 137
           PCP+ +SRD + C F N+
Sbjct: 104 PCPRCRSRDTKFCYFNNY 121


>08_01_0098 -
           700443-700660,701112-701268,701586-701678,701763-702149,
           702755-702829,703486-703609,703693-703832,703904-703993,
           704254-704298,704917-705042,705138-705272,705966-706451,
           706539-706596,706728-706855,707209-707463
          Length = 838

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 13/49 (26%), Positives = 20/49 (40%)
 Frame = -1

Query: 412 SMNFSHYELMRNLSQANSNSDGTFSGSNCNTATRPVDLNEKNEHLERYF 266
           SM  +  +  R  + A+  S   F    C      +DL    EH+ R+F
Sbjct: 645 SMEVNLVDGSRRENTASKESKSNFYSDKCTAYMSNIDLTANEEHIRRFF 693


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,475,379
Number of Sequences: 37544
Number of extensions: 395963
Number of successful extensions: 874
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 874
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)