Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10a15
         (862 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    23   3.6  
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    23   4.8  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    23   4.8  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   6.3  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   6.3  
DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    22   6.3  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    22   6.3  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    22   8.4  

>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
 Frame = -1

Query: 484 RNDILMNSSRASTFSHGLDNISLMSMNFSHYE-LMRNLSQANSNSDGTFSGSNCNTATRP 308
           RN  + +S  + T  H   +   +S    +   ++ + + AN+NS  +   S    AT  
Sbjct: 712 RNSEMFSSLLSDTEQHFRQHRDSLSPRVENRSAIVHSEASANANSSTSSEESREEKATTS 771

Query: 307 VDLN--EKNEHLER 272
           ++    EK+EH E+
Sbjct: 772 LEAEKREKSEHCEK 785


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -2

Query: 159 DYVNFKILFNPKKIYINIM 103
           +Y N+   +N KK+Y NI+
Sbjct: 310 NYKNYNNNYNSKKLYYNII 328


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -2

Query: 159 DYVNFKILFNPKKIYINIM 103
           +Y N+   +N KK+Y NI+
Sbjct: 321 NYKNYNNNYNSKKLYYNII 339


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 10/40 (25%), Positives = 20/40 (50%)
 Frame = -2

Query: 297 TKKTNTWRDISVVRKYGAIGTADLVDYSFSTQKNSFRVHK 178
           TK  + W  + +   +GA+    LV+Y+  +  +S  + K
Sbjct: 301 TKAIDIWTGVCLTFVFGALLEFALVNYASRSDMHSDNIEK 340


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 10/40 (25%), Positives = 20/40 (50%)
 Frame = -2

Query: 297 TKKTNTWRDISVVRKYGAIGTADLVDYSFSTQKNSFRVHK 178
           TK  + W  + +   +GA+    LV+Y+  +  +S  + K
Sbjct: 301 TKAIDIWTGVCLTFVFGALLEFALVNYASRSDMHSDNIEK 340


>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 21/59 (35%), Positives = 33/59 (55%)
 Frame = +3

Query: 324 LQLLPLNVPSELEFACDKFRISS*CEKFIDIKDILSNPWLNVEARLEFIKISLR*RIVG 500
           LQL+   +PS  E  CDK        +F+D  +  +N  L++E  L+F+K++L  RI G
Sbjct: 325 LQLIENVIPSNEELICDK--------RFVD--ESANN--LSIE-ELDFVKLNLI-RIAG 369


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 21/59 (35%), Positives = 33/59 (55%)
 Frame = +3

Query: 324 LQLLPLNVPSELEFACDKFRISS*CEKFIDIKDILSNPWLNVEARLEFIKISLR*RIVG 500
           LQL+   +PS  E  CDK        +F+D  +  +N  L++E  L+F+K++L  RI G
Sbjct: 340 LQLIENVIPSNEELICDK--------RFVD--ESANN--LSIE-ELDFVKLNLI-RIAG 384


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -1

Query: 307 VDLNEKNEHLERYFRSAEIWSDRN 236
           +D++EKN+ L       +IW+D +
Sbjct: 43  IDVDEKNQILTTNCWVTQIWTDHH 66


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 236,903
Number of Sequences: 438
Number of extensions: 5434
Number of successful extensions: 17
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27795333
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)