Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10a14
(816 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC119.12 |||Golgi matrix protein |Schizosaccharomyces pombe|ch... 35 0.012
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo... 31 0.15
SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein Ndc80|... 31 0.26
SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S... 29 0.60
SPAC18B11.06 |||U3 snoRNP-associated protein Lcp5 |Schizosacchar... 29 0.79
SPAPB2B4.03 |cig2|cyc17|cyclin Cig2|Schizosaccharomyces pombe|ch... 27 2.4
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 27 3.2
SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering compo... 27 4.2
SPBC14F5.08 |med7||mediator complex subunit Med7|Schizosaccharom... 26 5.6
SPAC4H3.01 |||DNAJ domain protein Caj1/Djp1 type|Schizosaccharom... 26 7.4
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 26 7.4
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 26 7.4
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac... 25 9.7
SPBC15D4.05 |||conserved protein|Schizosaccharomyces pombe|chr 2... 25 9.7
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 25 9.7
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb... 25 9.7
SPBC16E9.08 |mcp4|mug101|sequence orphan|Schizosaccharomyces pom... 25 9.7
SPBC83.15 |||ribosome biogenesis protein Nsa1|Schizosaccharomyce... 25 9.7
>SPBC119.12 |||Golgi matrix protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 401
Score = 35.1 bits (77), Expect = 0.012
Identities = 30/113 (26%), Positives = 53/113 (46%), Gaps = 5/113 (4%)
Frame = -3
Query: 742 EQHVQMINDVEASPTNSIEYYKHRMDSEQRVHHEIELLLNIKIGEIFAKVESWMNKYDAD 563
+Q+ ++ + + T S ++ + D HE++ L +++ A E + +
Sbjct: 151 QQNASLVEENQLLSTQSKQWERRARDE-----HEMQESLAVRL----ADCEEQLARETER 201
Query: 562 MEKIELKIQ-HKQNEHQKIFDKRVELEETLEKHQK----LIQNWQKFKDDREE 419
E+ E++IQ H N+HQ +ELE T H + L +NWQK DD E
Sbjct: 202 QEQYEVEIQRHLTNQHQL----EIELESTKASHTENLGELTRNWQKAMDDVTE 250
>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1065
Score = 31.5 bits (68), Expect = 0.15
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Frame = -3
Query: 565 DMEKIELKIQHKQNEHQKIFDKRVELEETL--EKHQKL--IQNWQKFKDDREEARL 410
+++ E K+Q K NEH+ + + ++ TL E+ +KL I WQ+ ++ E L
Sbjct: 645 NLQNEERKLQEKVNEHESLLSRTNDILSTLRKERDEKLIPIHEWQQLQERIEHQTL 700
>SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein
Ndc80|Schizosaccharomyces pombe|chr 2|||Manual
Length = 624
Score = 30.7 bits (66), Expect = 0.26
Identities = 15/68 (22%), Positives = 36/68 (52%)
Frame = -3
Query: 622 IKIGEIFAKVESWMNKYDADMEKIELKIQHKQNEHQKIFDKRVELEETLEKHQKLIQNWQ 443
+K + ++S M M+++++ I+ K+++ Q + +KR L+ +E I ++
Sbjct: 313 VKFQSAMSGMKSKMESRTNLMKQLQVNIEEKESQLQLLKEKRDSLKYQVENQDISISEFE 372
Query: 442 KFKDDREE 419
K +RE+
Sbjct: 373 KMVSEREQ 380
>SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein
Pkl1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 832
Score = 29.5 bits (63), Expect = 0.60
Identities = 16/69 (23%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Frame = -3
Query: 583 MNKYDADMEKIELKI-QHKQNEHQKIFDKRVELEETLEKHQKLIQNWQKFKDDREEARLF 407
+ Y EK + I + K+N ++ ++L+E E+ + ++QK + + +E L+
Sbjct: 202 LQSYREAAEKAKQDILETKENLSSELSISNIQLKEAKERLEAANASYQKLRREHKELALY 261
Query: 406 EEKMNNAAV 380
EK ++ V
Sbjct: 262 HEKKTHSLV 270
>SPAC18B11.06 |||U3 snoRNP-associated protein Lcp5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 327
Score = 29.1 bits (62), Expect = 0.79
Identities = 19/64 (29%), Positives = 32/64 (50%)
Frame = -3
Query: 670 MDSEQRVHHEIELLLNIKIGEIFAKVESWMNKYDADMEKIELKIQHKQNEHQKIFDKRVE 491
MDSE+R H L++ + + V M +++EK I + E QK+ +R+E
Sbjct: 179 MDSEKRTRHRPNHLVDEFVSSDMSSVPQSMPSVGSNLEKRGRVIHADERELQKM-RERIE 237
Query: 490 LEET 479
EE+
Sbjct: 238 YEES 241
>SPAPB2B4.03 |cig2|cyc17|cyclin Cig2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 411
Score = 27.5 bits (58), Expect = 2.4
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -2
Query: 626 KYKDRRNFRES*IVDEQIRRRYGKDRTED 540
KY +R + S V + +R+RY +RT+D
Sbjct: 367 KYSSKRFLKASIFVHQLVRQRYSVNRTDD 395
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 27.1 bits (57), Expect = 3.2
Identities = 15/66 (22%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Frame = -3
Query: 583 MNKYDADMEKIELKIQHKQNEHQKIFDKRVELEETLEKHQKLIQNWQKFKDDREE-ARLF 407
+ K DA++ +++ +++ +QN ++ VE +L + L+ + D+EE R
Sbjct: 826 LKKRDAEIIELKYELKKQQNSKSEVERDLVETNNSLTAVENLLTTERAIALDKEEILRRT 885
Query: 406 EEKMNN 389
+E++ N
Sbjct: 886 QERLAN 891
>SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering
component Pep7 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 536
Score = 26.6 bits (56), Expect = 4.2
Identities = 18/87 (20%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Frame = -3
Query: 706 SPTNSIEYYKHRMDSEQRVHHEIELLLNIKIGEIFAKV-ESWMNKYDADMEKIELKIQHK 530
S ++ E +K + +E + + + E +L ++ +V ++W ++ + ++EK + +++ K
Sbjct: 415 SSNDAEEQFKQNVVNEAKRYLQ-ETILRLQAIPYHLQVGQAWTSESERELEKKKEQVEKK 473
Query: 529 QNEHQKIFDKRVELEETLEKHQKLIQN 449
Q E + R+ LEE + + +I++
Sbjct: 474 QEE---LMQTRIVLEEQVFLVENMIED 497
>SPBC14F5.08 |med7||mediator complex subunit
Med7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 376
Score = 26.2 bits (55), Expect = 5.6
Identities = 11/41 (26%), Positives = 26/41 (63%)
Frame = -3
Query: 553 IELKIQHKQNEHQKIFDKRVELEETLEKHQKLIQNWQKFKD 431
+E +++H++++ + + ++ ETLEK++ L N +K D
Sbjct: 287 LEKQLKHEESQVELLRTHNRQMTETLEKYKSLDFNMEKEGD 327
>SPAC4H3.01 |||DNAJ domain protein Caj1/Djp1
type|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 25.8 bits (54), Expect = 7.4
Identities = 13/53 (24%), Positives = 23/53 (43%)
Frame = -3
Query: 529 QNEHQKIFDKRVELEETLEKHQKLIQNWQKFKDDREEARLFEEKMNNAAVTVQ 371
+ E + I D+R ++E E +K + +W E EK A T++
Sbjct: 164 KREQEMIEDRRQRIKEVTENLEKRLDDWIAKATTEEGLNALREKYTQEANTLR 216
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 25.8 bits (54), Expect = 7.4
Identities = 22/110 (20%), Positives = 52/110 (47%), Gaps = 4/110 (3%)
Frame = -3
Query: 757 QRARTEQHVQMINDVEASPTNSIEYYKHRMDSEQ---RVHHEIELLLNIKIGEIFAKVES 587
++ +T++ ++ + ++ +E + SE + I+ + K+ E A +
Sbjct: 1602 EKEKTKEELENQLNEKSQRIKELEEQAQKNSSENTHDNIDDMIKQQVEEKLKENSANFDV 1661
Query: 586 WMNKYDADME-KIELKIQHKQNEHQKIFDKRVELEETLEKHQKLIQNWQK 440
+ K A+ E + + KI + + + + +K +LEET+E K + N +K
Sbjct: 1662 KLKKVVAETEFRSKAKISVYEKKTRDLQNKITQLEETIENLNKQLSNPEK 1711
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 25.8 bits (54), Expect = 7.4
Identities = 11/46 (23%), Positives = 26/46 (56%)
Frame = -3
Query: 598 KVESWMNKYDADMEKIELKIQHKQNEHQKIFDKRVELEETLEKHQK 461
++++ + DA+ K+ ++ Q+EH +R +LE+ L+ +K
Sbjct: 1306 ELDNRLTTTDAEFTKVVADLEKLQHEHDDWLIQRGDLEKALKDSEK 1351
>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
Cut14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1172
Score = 25.4 bits (53), Expect = 9.7
Identities = 13/55 (23%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = -3
Query: 613 GEIFAKVESWMNKYDADMEKIELKIQHKQNEHQKIFDKRVELEETLEKHQK-LIQ 452
G A++E N+Y +++ ++ +N++ + + +LE L+ HQ+ L+Q
Sbjct: 789 GSKMAELEKEFNQYKHKLDEFTPILEKSENDYNGVKLECEQLEGELQNHQQSLVQ 843
>SPBC15D4.05 |||conserved protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 411
Score = 25.4 bits (53), Expect = 9.7
Identities = 7/20 (35%), Positives = 14/20 (70%)
Frame = -1
Query: 687 STINTEWTVSKESTTKLNCS 628
+T N EW++ + + + +NCS
Sbjct: 268 NTSNLEWSIQRSNDSNINCS 287
>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1060
Score = 25.4 bits (53), Expect = 9.7
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +1
Query: 439 TSANSVSASDVSPAFPQAPLSYQISFDAHS 528
+++ S SD+SPA P+A L I+ +A S
Sbjct: 302 SASAGTSFSDISPAAPKASLENNIASNASS 331
>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 2386
Score = 25.4 bits (53), Expect = 9.7
Identities = 15/55 (27%), Positives = 29/55 (52%)
Frame = -3
Query: 739 QHVQMINDVEASPTNSIEYYKHRMDSEQRVHHEIELLLNIKIGEIFAKVESWMNK 575
QH + I+++ S N++ + + E+R + E L N G++F K+ W+ K
Sbjct: 1706 QHRKAISELNFSLNNNM--FDLVDEHEERPKNRKETLGNPLKGKVFLKLTKWLGK 1758
>SPBC16E9.08 |mcp4|mug101|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 355
Score = 25.4 bits (53), Expect = 9.7
Identities = 11/38 (28%), Positives = 23/38 (60%)
Frame = -3
Query: 583 MNKYDADMEKIELKIQHKQNEHQKIFDKRVELEETLEK 470
+NK ++EK+EL++ Q + + +VE+ T+E+
Sbjct: 305 INKEIIEIEKLELEVVQFQMSIANLINTQVEVTNTIEE 342
>SPBC83.15 |||ribosome biogenesis protein Nsa1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 25.4 bits (53), Expect = 9.7
Identities = 11/38 (28%), Positives = 25/38 (65%)
Frame = -3
Query: 583 MNKYDADMEKIELKIQHKQNEHQKIFDKRVELEETLEK 470
+N+ DA++ K E +++ + E ++I+ +LE+T +K
Sbjct: 342 INERDAEIIKKEEELEAAKEEEEEIWRNMEQLEDTEDK 379
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,667,976
Number of Sequences: 5004
Number of extensions: 49365
Number of successful extensions: 199
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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