Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10a14
(816 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0670 + 35434203-35434355,35436601-35436729,35436978-354384... 33 0.21
12_01_0619 - 5102970-5103750,5103825-5104065,5104794-5104797 33 0.36
07_01_1139 - 10684647-10685837,10685877-10686251,10686351-106865... 30 1.9
03_05_0086 - 20642873-20643033,20643384-20643504,20643698-206437... 30 1.9
02_05_1224 + 35045268-35045270,35045735-35045863,35046037-350461... 30 1.9
02_01_0611 - 4567839-4568144,4568280-4569209,4569301-4569566,456... 30 1.9
01_06_1530 - 38019997-38020011,38020705-38020867,38021126-380212... 30 1.9
02_05_0484 - 29401195-29401404,29401572-29401755,29401866-294039... 30 2.5
01_06_0343 + 28566513-28566644,28566791-28568494,28569178-285692... 29 3.3
07_01_1025 + 8861153-8861376,8861929-8863027 29 4.4
03_02_0055 - 5295466-5295476,5295519-5296635,5296760-5296855,529... 29 4.4
11_06_0632 + 25674807-25675477,25676472-25677861,25677948-256780... 29 5.8
11_06_0399 - 23129476-23129745,23131040-23131121,23131216-231317... 29 5.8
07_03_0951 - 22836167-22836358,22836455-22837213 29 5.8
02_03_0236 + 16717320-16717496,16718082-16718240,16719410-167194... 29 5.8
01_06_0836 - 32321431-32321556,32321656-32321872,32321975-323235... 29 5.8
10_02_0128 + 5567202-5568107,5568587-5568968,5570356-5570423,557... 28 7.7
04_01_0301 + 4016588-4016627,4016715-4018837 28 7.7
01_01_1129 - 8948612-8950117,8951354-8951503 28 7.7
>03_06_0670 +
35434203-35434355,35436601-35436729,35436978-35438409,
35438524-35439014
Length = 734
Score = 33.5 bits (73), Expect = 0.21
Identities = 18/65 (27%), Positives = 30/65 (46%)
Frame = -3
Query: 571 DADMEKIELKIQHKQNEHQKIFDKRVELEETLEKHQKLIQNWQKFKDDREEARLFEEKMN 392
D +K + K +HK + K DK ELEE E+H + + + + R+ + + K
Sbjct: 125 DKHRDKKDRKEKHKDKKKDKSKDKSRELEEGTERHSEALHGQKVGESSRKSEEIKDPKSR 184
Query: 391 NAAVT 377
VT
Sbjct: 185 EDLVT 189
>12_01_0619 - 5102970-5103750,5103825-5104065,5104794-5104797
Length = 341
Score = 32.7 bits (71), Expect = 0.36
Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 6/68 (8%)
Frame = -3
Query: 574 YDADMEKIELKIQHKQN--EHQKIFDKRVEL----EETLEKHQKLIQNWQKFKDDREEAR 413
Y + K + K +H +N E +K +KR++ E+ KH K+I +K K++R +
Sbjct: 186 YKTMLAKEKDKAEHHKNMLEEEKDNNKRLKTMLVEEKDKNKHHKIILEEEKDKNERLKTM 245
Query: 412 LFEEKMNN 389
L EEK+ N
Sbjct: 246 LSEEKVKN 253
>07_01_1139 -
10684647-10685837,10685877-10686251,10686351-10686534,
10686699-10686895
Length = 648
Score = 30.3 bits (65), Expect = 1.9
Identities = 18/48 (37%), Positives = 25/48 (52%)
Frame = +2
Query: 629 EQFNFVVDSLLTVHSVFIVLYGIRRGRFYVVYHLYMLFGARPLPTVHV 772
EQF V+ + +H + + L + R YV Y Y+L RPLPT V
Sbjct: 357 EQFARFVEVIQKIH-INVPLLDAMQVRTYVHYLKYILNNKRPLPTTEV 403
>03_05_0086 -
20642873-20643033,20643384-20643504,20643698-20643744,
20643882-20643921,20644331-20644418,20644949-20645161,
20645589-20645628,20646332-20646416
Length = 264
Score = 30.3 bits (65), Expect = 1.9
Identities = 13/42 (30%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = -3
Query: 562 MEKIELKIQHKQNE-HQKIFDKRVELEETLEKHQKLIQNWQK 440
++K+ K+ + E HQK +K ++L ++KH+KL + K
Sbjct: 210 LQKLMAKLDEESEELHQKFLEKDIDLPTFVQKHKKLRTAYHK 251
>02_05_1224 +
35045268-35045270,35045735-35045863,35046037-35046180,
35046306-35046451,35046583-35046739,35046838-35046896,
35046978-35047137,35047716-35047865,35047969-35048105,
35048186-35048332,35048428-35048540,35048880-35048971,
35049637-35049738,35050108-35050145,35050255-35050381,
35050462-35050632,35050721-35050852,35050929-35051038,
35051118-35051178,35051386-35051427,35051756-35051933,
35052043-35052248,35052843-35052962,35053138-35053182,
35053310-35053408,35053846-35054058,35054254-35054393,
35054469-35054583,35054684-35054722,35054816-35054899,
35054969-35055139,35055891-35056100,35056193-35056378,
35056473-35056601,35056679-35056749,35056834-35056933,
35057016-35057072,35057778-35057834,35057940-35058020,
35058256-35058338,35058448-35058562
Length = 1572
Score = 30.3 bits (65), Expect = 1.9
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -3
Query: 418 ARLFEEKMNNAAVTVQSWWRGLLVRLEL 335
ARL+ + AA+T Q WRG + R EL
Sbjct: 876 ARLYYSRTKKAAITTQCAWRGKVARKEL 903
>02_01_0611 -
4567839-4568144,4568280-4569209,4569301-4569566,
4569662-4569970,4570497-4570647,4570958-4571012,
4571137-4571512,4571560-4571797,4571878-4572096,
4572629-4572910
Length = 1043
Score = 30.3 bits (65), Expect = 1.9
Identities = 14/66 (21%), Positives = 32/66 (48%)
Frame = -3
Query: 565 DMEKIELKIQHKQNEHQKIFDKRVELEETLEKHQKLIQNWQKFKDDREEARLFEEKMNNA 386
+MEK+ LK + Q++ +LE +K + L ++W+ K R +E+ +
Sbjct: 577 EMEKLSLKNDTDKASKQRLSKLEADLESLKQKQKNLSEHWEYEKSLMTRIRSIKEETDRV 636
Query: 385 AVTVQS 368
+ +++
Sbjct: 637 NLEIEA 642
>01_06_1530 -
38019997-38020011,38020705-38020867,38021126-38021211,
38021297-38022642,38022980-38023193
Length = 607
Score = 30.3 bits (65), Expect = 1.9
Identities = 15/46 (32%), Positives = 28/46 (60%)
Frame = -3
Query: 628 LNIKIGEIFAKVESWMNKYDADMEKIELKIQHKQNEHQKIFDKRVE 491
LN + G+IF ++ ++ DA +EKI+L+++H + F K +E
Sbjct: 481 LNSRYGQIFKDFDADIDTKDALLEKIKLELKHLERSKDD-FAKEIE 525
>02_05_0484 -
29401195-29401404,29401572-29401755,29401866-29403973,
29404320-29404403,29404507-29404777,29404864-29405117,
29405513-29405722,29406357-29406503
Length = 1155
Score = 29.9 bits (64), Expect = 2.5
Identities = 20/88 (22%), Positives = 43/88 (48%)
Frame = -3
Query: 673 RMDSEQRVHHEIELLLNIKIGEIFAKVESWMNKYDADMEKIELKIQHKQNEHQKIFDKRV 494
++ E+R H ++L ++ + + N + E + + Q + E +++ +KR
Sbjct: 464 KLTEEERQEH---IMLTAQLKKEIDEYRMRSNSLSEETEDLRKQRQKFEEEWEQLDEKRT 520
Query: 493 ELEETLEKHQKLIQNWQKFKDDREEARL 410
LEE +K +N +++ D+ EE RL
Sbjct: 521 HLEEEAKKLNNEKKNLERWHDN-EEKRL 547
Score = 29.1 bits (62), Expect = 4.4
Identities = 32/161 (19%), Positives = 74/161 (45%), Gaps = 2/161 (1%)
Frame = -3
Query: 811 VEDSAINAEARSRYMDGWQRARTEQHVQMINDVEASPTNSIEYYKHRMDSEQRVHHEIEL 632
+ED + E++ R D + M+ EA + ++ K SE+++ + E
Sbjct: 329 LEDHNVKLESKRRDFDLQLENEKKSFDAMLVQKEA---DLVQREKDVRSSEEKLSKK-EQ 384
Query: 631 LLNIKIGEIFAKVESWMNKYDADMEKIELKIQHKQNEHQKIFDKRVELEETLEKHQ--KL 458
+LN E K+E W N D ++ + QN+ +++ ++++++E ++ + KL
Sbjct: 385 VLN----ESKKKLEEWQNDLDTKSNALKKWEESLQNDEKQLSEQKLQIENERKQAEMYKL 440
Query: 457 IQNWQKFKDDREEARLFEEKMNNAAVTVQSWWRGLLVRLEL 335
K E+ ++ +E+ NN +T + +++ +L
Sbjct: 441 ELESLKATVVAEKEKILQEQ-NNLKLTEEERQEHIMLTAQL 480
>01_06_0343 +
28566513-28566644,28566791-28568494,28569178-28569240,
28569241-28569310,28570438-28570715,28571886-28571963,
28573017-28573715,28573811-28573913,28574096-28574196,
28574272-28574446,28574843-28575013,28575534-28575634,
28575706-28575771
Length = 1246
Score = 29.5 bits (63), Expect = 3.3
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = -2
Query: 806 RFSYKCRSSKPLHGRLAAGAH--RTACTDDKRRRSVPDEFHRVL 681
R S R SKP ++AGA R+ KR+R + D+F+ VL
Sbjct: 578 RVSATSRRSKPRRSSVSAGAWNPRSPSFTIKRKRKISDDFYHVL 621
>07_01_1025 + 8861153-8861376,8861929-8863027
Length = 440
Score = 29.1 bits (62), Expect = 4.4
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +1
Query: 679 YSTLWNSSGTLLRRLSSVHAVRCAPAANRPCSGF 780
++ W +SG +L L+ +H + CAPA RP + F
Sbjct: 27 HTCAWLASGFVL--LALLHLLCCAPAGTRPAAAF 58
>03_02_0055 -
5295466-5295476,5295519-5296635,5296760-5296855,
5297097-5297263,5297345-5297519,5297521-5297699,
5298004-5298109
Length = 616
Score = 29.1 bits (62), Expect = 4.4
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = -3
Query: 535 HKQNEHQKIFDKRVELEETLEKHQKLIQNWQKFKDDREEARLFEEKM 395
H+ E K+ DK VEL E KH ++ F DD+++ + EK+
Sbjct: 314 HQNEEDYKVSDKMVELAE---KHNITLRGHNVFWDDQDKQMDWVEKL 357
>11_06_0632 +
25674807-25675477,25676472-25677861,25677948-25678083,
25678185-25678282,25678470-25678535,25678699-25678827,
25679570-25679746,25680576-25680614
Length = 901
Score = 28.7 bits (61), Expect = 5.8
Identities = 26/130 (20%), Positives = 54/130 (41%), Gaps = 3/130 (2%)
Frame = -3
Query: 796 INAEARSRYMDGWQRARTEQHVQ---MINDVEASPTNSIEYYKHRMDSEQRVHHEIELLL 626
+ A+A Y DG+ R + H Q M + E S + +E + D Q ++
Sbjct: 429 LQAKANGNY-DGYVRQSNQNHNQYRDMPDQAEVSSLDEMEGFAK--DKSQMPSYDDNFFG 485
Query: 625 NIKIGEIFAKVESWMNKYDADMEKIELKIQHKQNEHQKIFDKRVELEETLEKHQKLIQNW 446
+ E + + ++ E+K+ ++ Q+ +K ELE+ E+ ++ ++
Sbjct: 486 EAEQSERTSSDREEKERQARLEQEQEMKLMEEKKREQRRLEKERELEQQKERERQAMERA 545
Query: 445 QKFKDDREEA 416
K +R A
Sbjct: 546 TKEARERASA 555
>11_06_0399 -
23129476-23129745,23131040-23131121,23131216-23131711,
23132135-23132699,23132825-23132893
Length = 493
Score = 28.7 bits (61), Expect = 5.8
Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 7/70 (10%)
Frame = -3
Query: 601 AKVESWMN----KYDADMEKIELKIQH-KQNEHQKIFDKRVELEETLEKHQKL--IQNWQ 443
AK+++W+N K +A K+E+KIQ + N +K+ + + E+ + Q+ Q
Sbjct: 383 AKIQAWINLESAKAEAQSRKLEVKIQKMRSNLEEKLMRRMTTVHRRAEEWRATAQAQHLQ 442
Query: 442 KFKDDREEAR 413
+ K E+ R
Sbjct: 443 QLKRAAEQVR 452
>07_03_0951 - 22836167-22836358,22836455-22837213
Length = 316
Score = 28.7 bits (61), Expect = 5.8
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = -3
Query: 637 ELLLNIKIGEIFAKVESWMNKYDADMEKIELKIQHK-QNEHQKIFDKRVELEETLE 473
E+++N G+ K +W+ KY+ +E+ K K QNE K K E + E
Sbjct: 231 EVVINGWEGDQVEKANAWLKKYERKLEEKRAKAMEKAQNEVAKARRKAEEKRASAE 286
>02_03_0236 +
16717320-16717496,16718082-16718240,16719410-16719472,
16720041-16720205,16721140-16721217,16721318-16721428,
16721516-16721632,16721713-16721808,16722592-16722662,
16722780-16723011
Length = 422
Score = 28.7 bits (61), Expect = 5.8
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Frame = -3
Query: 619 KIGEIFAKVESWMNKYDADMEKIELKIQHKQNE--HQKIFDKRVELE-ETLEKHQKLIQN 449
K+G +E +K+ A +E L+I Q +KIF KR ELE E+L+K + +
Sbjct: 204 KMGGYIVNIEKVKDKHAAYLEVSRLEIFFHQLSMYEEKIFLKRYELEQESLKKSCRDVLR 263
Query: 448 WQKFKDDREEARLFEEKMNN 389
+ E +R E++ N
Sbjct: 264 EASESERLELSRKLEDRFFN 283
>01_06_0836 - 32321431-32321556,32321656-32321872,32321975-32323590,
32323670-32323753,32323834-32324104,32324294-32324547,
32324709-32324918,32325839-32326024
Length = 987
Score = 28.7 bits (61), Expect = 5.8
Identities = 32/156 (20%), Positives = 65/156 (41%), Gaps = 4/156 (2%)
Frame = -3
Query: 793 NAEARSRYMDGWQRARTEQHVQMINDVEASPTN---SIEYYK-HRMDSEQRVHHEIELLL 626
N+E SR + ++H ++ ++ + I+ + ++S + EI+ L
Sbjct: 571 NSETLSREHKEFMSKMQQEHASWLSKIQQERQDLKRDIDIQRVELLNSAKARQMEIDSYL 630
Query: 625 NIKIGEIFAKVESWMNKYDADMEKIELKIQHKQNEHQKIFDKRVELEETLEKHQKLIQNW 446
+ E K + ++ E I K++H E QK+ D+R E TLE+ ++ Q
Sbjct: 631 REREEEFEQKKAKELEHINSQKEMINTKLEHVAVELQKLKDER--KEATLERERR-EQEL 687
Query: 445 QKFKDDREEARLFEEKMNNAAVTVQSWWRGLLVRLE 338
+ K E EK+ + S + V+++
Sbjct: 688 SEIKGTIEALNNQREKLQEQRKLLHSDREAITVQIQ 723
>10_02_0128 +
5567202-5568107,5568587-5568968,5570356-5570423,
5570899-5571034,5571206-5571283,5571623-5571747
Length = 564
Score = 28.3 bits (60), Expect = 7.7
Identities = 11/35 (31%), Positives = 23/35 (65%)
Frame = -3
Query: 565 DMEKIELKIQHKQNEHQKIFDKRVELEETLEKHQK 461
+ME++ +K QHK N + ++ + +E L++HQ+
Sbjct: 433 NMERLAMK-QHKMNNYVNVWKPAMLVENELQEHQR 466
>04_01_0301 + 4016588-4016627,4016715-4018837
Length = 720
Score = 28.3 bits (60), Expect = 7.7
Identities = 25/108 (23%), Positives = 48/108 (44%), Gaps = 1/108 (0%)
Frame = -3
Query: 718 DVEASPTNSIEYYKHRMDSEQRVHHEIELLLNIKIGEIFAKVESWMNKYDADMEKIELKI 539
D + +E K R E+E L + + KV + KY+ +EK+++++
Sbjct: 43 DEKGKVEKQLEETKQEAQVISRQKEEVESSLKGQNEMLGLKVLNVEEKYNHMVEKLQMEL 102
Query: 538 QHKQNEHQKIFDKRVELEETLEKHQKLIQNWQKFKDD-REEARLFEEK 398
E +K+ + +L+ LE+ Q + KD R EA + ++K
Sbjct: 103 CALVKEKEKMMMESEDLKRRLEEIQAKKDLMESEKDMLRSEAMITKQK 150
>01_01_1129 - 8948612-8950117,8951354-8951503
Length = 551
Score = 28.3 bits (60), Expect = 7.7
Identities = 14/49 (28%), Positives = 28/49 (57%)
Frame = -3
Query: 535 HKQNEHQKIFDKRVELEETLEKHQKLIQNWQKFKDDREEARLFEEKMNN 389
HK+ E +K + +V++ + E ++ + Q+ KD+ A + EEK N+
Sbjct: 53 HKETEERKYDEMKVDVPQEEEDNEMKVDAPQEKKDNEVTADVPEEKGND 101
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,591,486
Number of Sequences: 37544
Number of extensions: 297285
Number of successful extensions: 1088
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1039
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1087
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2232933960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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