Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10a13
         (874 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    30   0.49 
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    29   0.65 
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo...    28   2.0  
SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   2.6  
SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr...    26   8.1  
SPAC24B11.14 ||SPAC806.10|sequence orphan|Schizosaccharomyces po...    26   8.1  

>SPCC162.08c |nup211||nuclear pore complex associated
            protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 29.9 bits (64), Expect = 0.49
 Identities = 51/220 (23%), Positives = 87/220 (39%), Gaps = 16/220 (7%)
 Frame = -3

Query: 791  QLQPFIKLLQERIIELKQLMKQDTDSVASTIEKFNSLLLFNEERCSQLEMKFFKVLNESF 612
            ++Q   K +++    L  L  +  +  A    K  SL L  E   S+ +++F  VLN+  
Sbjct: 1289 KIQELEKEVEKLNASLNPLQTEINELKAEIGAKTASLNLMKEYN-SRWKLRFQSVLNKYE 1347

Query: 611  YDDVGAFHVLKLKSCLDFCYEKVYSERPLN---LEMITIAK---TLENSYFNYCSRIDVI 450
              D      LK K+C     EK   E  L     E  T  +   +L     N    ++  
Sbjct: 1348 RVDPTQLEELK-KNCEALEKEKQELETKLQETAKETDTFKQQVNSLNEEVENLKKEVEQA 1406

Query: 449  RNVTIRNAI---QRCEEVEKKKL-------QRAYEANQELQIFNRLQKHLTRAFEPKYDS 300
                 R A    ++CE ++K  L       Q     N+EL   N   + + +  E   DS
Sbjct: 1407 NTKNTRLAAAWNEKCENLKKSSLTRFAHLKQELTNKNKELTSKNAENEAMQKEIESLKDS 1466

Query: 299  KNKLSLLPIVFRNEKTKKRSEKIKSVAELNRRSLTEAERE 180
             ++L         + TK++ E++KS  E   + L +++ E
Sbjct: 1467 NHQLQESASSDAEQITKEQFEQLKSEKERTEKELADSKNE 1506


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
            Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 29.5 bits (63), Expect = 0.65
 Identities = 18/58 (31%), Positives = 26/58 (44%)
 Frame = -3

Query: 296  NKLSLLPIVFRNEKTKKRSEKIKSVAELNRRSLTEAEREYLCLFTDWTEHEDPAVYLK 123
            +K  LLP+   N  T   S ++K+   L    L       L  F  + E  +PA+YLK
Sbjct: 1205 SKPKLLPLCLVNLSTNNLSVRLKAFELLGNFHLNNFTMTALMEFKTFLESSNPALYLK 1262


>SPAC56F8.03 |||translation initiation factor IF2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1079

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = -3

Query: 254 TKKRSEKIKSVAELNRRSLTEAEREYLCLFTDW-TEHEDPAV 132
           +K  SEK++   E+ R+   EAE E   +F DW    E+P V
Sbjct: 390 SKDDSEKVEKETEVERKEENEAEAE--AVFDDWEAALEEPEV 429


>SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 395

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 15/62 (24%), Positives = 31/62 (50%)
 Frame = -3

Query: 836 DDIXKRQLHIFNYIFQLQPFIKLLQERIIELKQLMKQDTDSVASTIEKFNSLLLFNEERC 657
           DD+ KR+  + N + +++   K L ER  +L +  +   +      E+  S +  N+E+ 
Sbjct: 231 DDLKKREKDLENRLLKVEEHEKSLNERATKLSEANENFNNRFKEFEEREKSAIKQNKEQS 290

Query: 656 SQ 651
           S+
Sbjct: 291 SE 292


>SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 647

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
 Frame = -3

Query: 359 QIFNRLQKHLTRAFEPKYDSKNKLSLL---PIVFRNEKTKKRSEKIKSVAELNRRSLTEA 189
           Q+      ++T A  P+ D+  +++ L    +   NEK         +   LN +S T+ 
Sbjct: 385 QVTTTSLSNMTVAESPRTDTPREINGLVDSSVTNGNEKFSVEIMNDSNKIGLNPKSFTDE 444

Query: 188 EREYLCLF 165
           ERE L LF
Sbjct: 445 EREILTLF 452


>SPAC24B11.14 ||SPAC806.10|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 166

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = -3

Query: 452 IRNVTIRNAIQRCEEVEKKKLQRAYEANQELQIFNRLQKHLTRAF 318
           +R +++RN       V      R    NQ+L++FNR  K    +F
Sbjct: 13  LRLISLRNCSNTWTFVPYANSNRGLNINQQLKLFNRRSKIALSSF 57


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,227,466
Number of Sequences: 5004
Number of extensions: 63604
Number of successful extensions: 200
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)