Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10a13
(874 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0757 - 10940993-10941112,10941218-10941418,10941661-109417... 35 0.074
11_01_0113 + 881806-881996,882831-882921,883140-883255,884489-88... 33 0.30
05_03_0080 - 8245082-8246656,8246657-8246935,8247502-8247513 31 1.6
09_04_0591 + 18813557-18813663,18814332-18814392,18814526-188146... 30 2.1
08_02_1336 - 26233081-26233312,26233814-26234672,26235218-26236736 29 4.9
03_06_0096 - 31627332-31627570,31628467-31628743,31628963-316291... 29 4.9
03_02_0386 + 8009884-8010133,8010274-8010338,8010545-8010658,801... 29 6.4
06_03_0508 - 21607706-21608863,21608943-21609090,21609411-216095... 28 8.5
>03_02_0757 -
10940993-10941112,10941218-10941418,10941661-10941795,
10941948-10942088,10942214-10942405,10942624-10942748,
10942828-10942903,10943024-10943173,10943467-10943856,
10944078-10944227,10944430-10944710,10945034-10945230,
10945836-10946035,10946422-10946469,10946566-10946688,
10946771-10946882,10946988-10947103,10947526-10947660
Length = 963
Score = 35.1 bits (77), Expect = 0.074
Identities = 24/105 (22%), Positives = 43/105 (40%)
Frame = -3
Query: 824 KRQLHIFNYIFQLQPFIKLLQERIIELKQLMKQDTDSVASTIEKFNSLLLFNEERCSQLE 645
KR + IF P K L++R K+L + + E ++ LL +E+ +
Sbjct: 31 KRYKKLLAEIFPKTPIAKFLEQR--SHKELRSAHVNFIKIITEAYSKLLFICKEQMAYFA 88
Query: 644 MKFFKVLNESFYDDVGAFHVLKLKSCLDFCYEKVYSERPLNLEMI 510
+ VL E H+L ++ F Y +V + N+E +
Sbjct: 89 ISLVNVLTELLESKQENIHILGCQTLAKFIYSQVDNTYARNIESL 133
>11_01_0113 +
881806-881996,882831-882921,883140-883255,884489-885260
Length = 389
Score = 33.1 bits (72), Expect = 0.30
Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Frame = -3
Query: 467 SRID--VIRNVTIRNAIQRCEEVEKKKLQRAYEANQELQIFNRLQKHLTRAFEPKYDSKN 294
S+ID V +NVT + + C+ KKL++ ++E+ + + + TR+ YD +N
Sbjct: 148 SQIDQGVDKNVTDNSLVSNCDFPVVKKLEKC--VDEEVSVQSPFENKDTRSLGMVYDHEN 205
Query: 293 KLSLLPIVFRNEKTKKRSEKIKSVAE 216
S + V R +K S +VA+
Sbjct: 206 NKSGVAEVIRPDKEAIESSSSMNVAD 231
>05_03_0080 - 8245082-8246656,8246657-8246935,8247502-8247513
Length = 621
Score = 30.7 bits (66), Expect = 1.6
Identities = 11/16 (68%), Positives = 14/16 (87%)
Frame = +1
Query: 703 VEATESVSCFINCFNS 750
VEATE V CF++CFN+
Sbjct: 373 VEATEIVGCFVDCFNN 388
>09_04_0591 +
18813557-18813663,18814332-18814392,18814526-18814639,
18814923-18815054,18815380-18815774,18815896-18815995,
18816099-18816158,18816240-18816326,18816511-18816639,
18816888-18817187
Length = 494
Score = 30.3 bits (65), Expect = 2.1
Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Frame = -3
Query: 554 YEKVYSERPLNLEMITIAKT-LENSYFNYCSRIDVIRNVTIRNAIQRCEEVEKKKLQRAY 378
YEK +E+ N+ MI + + ++ F+Y S++ TIR+ IQR E+++ K+
Sbjct: 234 YEKENNEQK-NIGMIIVPRIRIDADKFDYASKM----LETIRSLIQRLEKIDPTKMTHEE 288
Query: 377 EANQELQIFNRLQKHLTRAF 318
+ + I N L H A+
Sbjct: 289 QLCFWINIHNALVMHAFLAY 308
>08_02_1336 - 26233081-26233312,26233814-26234672,26235218-26236736
Length = 869
Score = 29.1 bits (62), Expect = 4.9
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = -3
Query: 713 VASTIEKFNSLLLFNEERCSQLEMKFFKVLNESFYDDVGAFH 588
VA+ K ++L F ERC LEM + ++S D VG H
Sbjct: 137 VAALFSKPDTLYCFICERCLNLEMSDMEAESDSSSDQVGCEH 178
>03_06_0096 -
31627332-31627570,31628467-31628743,31628963-31629118,
31629205-31629381,31629543-31629745,31630680-31630995
Length = 455
Score = 29.1 bits (62), Expect = 4.9
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Frame = -3
Query: 767 LQERIIELKQLMKQDTDSVASTIEKFNSLLLFN--EERCSQLEMKFFKVLNESFYDDVGA 594
+Q+ + + L D DS + I +FNS + ER +MK L+ FY++ G
Sbjct: 131 VQKVVYKSSLLHLGDDDSSRTEISRFNSFTGYQTLNEREESFKMKELTTLHCGFYNENGG 190
Query: 593 FHV 585
F V
Sbjct: 191 FKV 193
>03_02_0386 +
8009884-8010133,8010274-8010338,8010545-8010658,
8010736-8010895,8010975-8011093,8011209-8011635,
8011834-8012057,8012863-8012973,8013056-8013188,
8013259-8013365,8013430-8013444,8013482-8013571,
8013855-8013917,8013973-8014053,8014136-8014208,
8014312-8014367,8014460-8014554,8014649-8014683,
8015449-8015525
Length = 764
Score = 28.7 bits (61), Expect = 6.4
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = -3
Query: 317 EPKYDSKNKLS-LLPIVFRNEKTKKRSEKIKSVAELNRRSLTEAEREYLCL 168
E DS+ S +L ++ +N+K K + + + L+R L E E E +CL
Sbjct: 595 EAGVDSEGIASQVLSVLLQNDKRKTQEDNLLQCNILHRGGLMEGEMERICL 645
>06_03_0508 -
21607706-21608863,21608943-21609090,21609411-21609523,
21609612-21609705,21609841-21609950,21610093-21610257,
21611660-21611800
Length = 642
Score = 28.3 bits (60), Expect = 8.5
Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
Frame = -3
Query: 566 LDFCYEKVYSERPLNLEMITIAKTLENSYFNYCSRIDVIRNVTIRNAIQ-RCEEVEKKKL 390
LD+C + NL + +ENS +N+ R D V R+ + + K+K+
Sbjct: 72 LDYCKPEAIKNSAENLGEVLRGDRIENSVYNFKMRRDETCKVVCRSKLSPEAAKNFKEKI 131
Query: 389 QRAYEANQEL 360
Y N L
Sbjct: 132 DDEYRVNMIL 141
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,059,750
Number of Sequences: 37544
Number of extensions: 314690
Number of successful extensions: 855
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 855
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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