Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10a13
(874 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X82834-1|CAA58041.1| 2185|Homo sapiens 256 kD golgin protein. 35 0.33
U41740-1|AAC50434.1| 2230|Homo sapiens trans-Golgi p230 protein. 35 0.33
U31906-1|AAC51791.1| 2083|Homo sapiens golgin-245 protein. 35 0.33
BC130294-1|AAI30295.1| 676|Homo sapiens AMOT protein protein. 33 1.8
AY987378-1|AAY24451.1| 1084|Homo sapiens angiomotin p130 isoform... 33 1.8
AF286598-1|AAG01851.1| 675|Homo sapiens angiomotin protein. 33 1.8
AB028994-1|BAA83023.3| 675|Homo sapiens KIAA1071 protein protein. 33 1.8
AB033102-1|BAA86590.1| 1068|Homo sapiens KIAA1276 protein protein. 32 2.4
BC112391-1|AAI12392.1| 957|Homo sapiens ELKS/RAB6-interacting/C... 32 3.1
BC111550-1|AAI11551.1| 957|Homo sapiens ERC2 protein protein. 32 3.1
BC046520-1|AAH46520.1| 901|Homo sapiens SNX14 protein protein. 32 3.1
AB002376-1|BAA20832.2| 970|Homo sapiens KIAA0378 protein. 32 3.1
BC146785-1|AAI46786.1| 1556|Homo sapiens INOC1 protein protein. 31 4.1
AB033085-1|BAA86573.1| 1561|Homo sapiens KIAA1259 protein protein. 31 4.1
AK097408-1|BAC05038.1| 563|Homo sapiens protein ( Homo sapiens ... 31 5.5
Z97054-3|CAI42646.1| 1233|Homo sapiens structural maintenance of... 31 7.2
S78271-1|AAB34405.1| 1233|Homo sapiens SB1.8/DXS423E protein. 31 7.2
D80000-1|BAA11495.2| 1233|Homo sapiens KIAA0178 protein. 31 7.2
BC112127-1|AAI12128.1| 1233|Homo sapiens SMC1 structural mainten... 31 7.2
BC095479-1|AAH95479.1| 563|Homo sapiens coiled-coil domain cont... 31 7.2
BC064368-1|AAH64368.1| 847|Homo sapiens SMC1A protein protein. 31 7.2
AL161779-1|CAI42089.1| 1233|Homo sapiens structural maintenance ... 31 7.2
AF221130-1|AAF32366.1| 1556|Homo sapiens chromatin remodeling fa... 31 7.2
AF213467-1|AAF70601.1| 1556|Homo sapiens ATP-dependent chromatin... 31 7.2
AB032252-1|BAA89209.1| 1674|Homo sapiens bromodomain adjacent to... 31 7.2
BC095419-1|AAH95419.1| 946|Homo sapiens sorting nexin 14 protein. 30 9.5
BC068589-1|AAH68589.1| 946|Homo sapiens sorting nexin 14 protein. 30 9.5
BC005110-1|AAH05110.2| 893|Homo sapiens sorting nexin 14 protein. 30 9.5
AY044865-1|AAK97796.1| 886|Homo sapiens sorting nexin 14 protein. 30 9.5
AL589666-2|CAI40162.1| 886|Homo sapiens RP11-321N4.2 protein. 30 9.5
AL589666-1|CAI40163.1| 939|Homo sapiens RP11-321N4.2 protein. 30 9.5
AL136082-2|CAI20444.1| 886|Homo sapiens RP11-321N4.2 protein. 30 9.5
AL136082-1|CAI20445.1| 939|Homo sapiens RP11-321N4.2 protein. 30 9.5
AB209693-1|BAD92930.1| 1310|Homo sapiens golgi autoantigen, golg... 30 9.5
>X82834-1|CAA58041.1| 2185|Homo sapiens 256 kD golgin protein.
Length = 2185
Score = 35.1 bits (77), Expect = 0.33
Identities = 54/232 (23%), Positives = 94/232 (40%), Gaps = 10/232 (4%)
Frame = -3
Query: 845 NIXDDIXKRQLHIFNYIFQLQPFIK---LLQERIIELKQLMKQDTDSVASTIEKFNSLLL 675
++ D K + H+ L +K LQE+++ELK L ++D V+ K +
Sbjct: 1124 SLAQDETKLKAHLEKLEVDLNKSLKENTFLQEQLVELKMLAEEDKRKVSELTSKLKT--- 1180
Query: 674 FNEERCSQLEMKFFKVLNESFYDDVGAFHVL--KLKSCLDFCYEKVYS--ERPLNLEMIT 507
+E L+ K N+S D F L +L LD C +K + E N E+I
Sbjct: 1181 -TDEEFQSLKSSHEK-SNKSLEDKSLEFKKLSEELAIQLDICCKKTEALLEAKTN-ELIN 1237
Query: 506 IAKTLENSYFNYCSRIDVIRNVTIRNA--IQRCEEVE-KKKLQRAYEANQELQIFNRLQK 336
I+ + N+ + S R ++ A I+ C E + +L++ E L I +
Sbjct: 1238 ISSSKTNAILSRISHCQ-HRTTKVKEALLIKTCTVSELEAQLRQLTEEQNTLNISFQQAT 1296
Query: 335 HLTRAFEPKYDSKNKLSLLPIVFRNEKTKKRSEKIKSVAELNRRSLTEAERE 180
H E + S K + +V E +K + A +T+ ++E
Sbjct: 1297 HQLEEKENQIKSM-KADIESLVTEKEALQKEGGNQQQAASEKESCITQLKKE 1347
>U41740-1|AAC50434.1| 2230|Homo sapiens trans-Golgi p230 protein.
Length = 2230
Score = 35.1 bits (77), Expect = 0.33
Identities = 54/232 (23%), Positives = 94/232 (40%), Gaps = 10/232 (4%)
Frame = -3
Query: 845 NIXDDIXKRQLHIFNYIFQLQPFIK---LLQERIIELKQLMKQDTDSVASTIEKFNSLLL 675
++ D K + H+ L +K LQE+++ELK L ++D V+ K +
Sbjct: 1124 SLAQDETKLKAHLEKLEVDLNKSLKENTFLQEQLVELKMLAEEDKRKVSELTSKLKT--- 1180
Query: 674 FNEERCSQLEMKFFKVLNESFYDDVGAFHVL--KLKSCLDFCYEKVYS--ERPLNLEMIT 507
+E L+ K N+S D F L +L LD C +K + E N E+I
Sbjct: 1181 -TDEEFQSLKSSHEK-SNKSLEDKSLEFKKLSEELAIQLDICCKKTEALLEAKTN-ELIN 1237
Query: 506 IAKTLENSYFNYCSRIDVIRNVTIRNA--IQRCEEVE-KKKLQRAYEANQELQIFNRLQK 336
I+ + N+ + S R ++ A I+ C E + +L++ E L I +
Sbjct: 1238 ISSSKTNAILSRISHCQ-HRTTKVKEALLIKTCTVSELEAQLRQLTEEQNTLNISFQQAT 1296
Query: 335 HLTRAFEPKYDSKNKLSLLPIVFRNEKTKKRSEKIKSVAELNRRSLTEAERE 180
H E + S K + +V E +K + A +T+ ++E
Sbjct: 1297 HQLEEKENQIKSM-KADIESLVTEKEALQKEGGNQQQAASEKESCITQLKKE 1347
>U31906-1|AAC51791.1| 2083|Homo sapiens golgin-245 protein.
Length = 2083
Score = 35.1 bits (77), Expect = 0.33
Identities = 54/232 (23%), Positives = 94/232 (40%), Gaps = 10/232 (4%)
Frame = -3
Query: 845 NIXDDIXKRQLHIFNYIFQLQPFIK---LLQERIIELKQLMKQDTDSVASTIEKFNSLLL 675
++ D K + H+ L +K LQE+++ELK L ++D V+ K +
Sbjct: 979 SLAQDETKLKAHLEKLEVDLNKSLKENTFLQEQLVELKMLAEEDKRKVSELTSKLKT--- 1035
Query: 674 FNEERCSQLEMKFFKVLNESFYDDVGAFHVL--KLKSCLDFCYEKVYS--ERPLNLEMIT 507
+E L+ K N+S D F L +L LD C +K + E N E+I
Sbjct: 1036 -TDEEFQSLKSSHEK-SNKSLEDKSLEFKKLSEELAIQLDICCKKTEALLEAKTN-ELIN 1092
Query: 506 IAKTLENSYFNYCSRIDVIRNVTIRNA--IQRCEEVE-KKKLQRAYEANQELQIFNRLQK 336
I+ + N+ + S R ++ A I+ C E + +L++ E L I +
Sbjct: 1093 ISSSKTNAILSRISHCQ-HRTTKVKEALLIKTCTVSELEAQLRQLTEEQNTLNISFQQAT 1151
Query: 335 HLTRAFEPKYDSKNKLSLLPIVFRNEKTKKRSEKIKSVAELNRRSLTEAERE 180
H E + S K + +V E +K + A +T+ ++E
Sbjct: 1152 HQLEEKENQIKSM-KADIESLVTEKEALQKEGGNQQQAASEKESCITQLKKE 1202
>BC130294-1|AAI30295.1| 676|Homo sapiens AMOT protein protein.
Length = 676
Score = 32.7 bits (71), Expect = 1.8
Identities = 33/138 (23%), Positives = 71/138 (51%), Gaps = 3/138 (2%)
Frame = -3
Query: 578 LKSCLDFCYEKVYSERPLNLEMITIAKTLENSYFNYCSRIDVIRNVTIRNAIQRCEEVE- 402
L+ L+ CYEKV + + E+ +++ EN ++++ + R A+++ +
Sbjct: 39 LRQELEGCYEKVARLQKVETEIQRVSEAYEN----------LVKSSSKREALEKAMRNKL 88
Query: 401 KKKLQRAYEANQELQIFNRLQKHLTRAFEPKYD-SKNKLSLLPIVFRNEKTKKRSEKIKS 225
+ +++R ++ N++L+ RL+ + E +Y+ S++ + +F K +R EK K
Sbjct: 89 EGEIRRMHDFNRDLR--ERLETANKQLAEKEYEGSEDTRKTISQLFAKNKESQR-EKEKL 145
Query: 224 VAEL-NRRSLTEAEREYL 174
AEL RS E +R ++
Sbjct: 146 EAELATARSTNEDQRRHI 163
>AY987378-1|AAY24451.1| 1084|Homo sapiens angiomotin p130 isoform
protein.
Length = 1084
Score = 32.7 bits (71), Expect = 1.8
Identities = 33/138 (23%), Positives = 71/138 (51%), Gaps = 3/138 (2%)
Frame = -3
Query: 578 LKSCLDFCYEKVYSERPLNLEMITIAKTLENSYFNYCSRIDVIRNVTIRNAIQRCEEVE- 402
L+ L+ CYEKV + + E+ +++ EN ++++ + R A+++ +
Sbjct: 448 LRQELEGCYEKVARLQKVETEIQRVSEAYEN----------LVKSSSKREALEKAMRNKL 497
Query: 401 KKKLQRAYEANQELQIFNRLQKHLTRAFEPKYD-SKNKLSLLPIVFRNEKTKKRSEKIKS 225
+ +++R ++ N++L+ RL+ + E +Y+ S++ + +F K +R EK K
Sbjct: 498 EGEIRRMHDFNRDLR--ERLETANKQLAEKEYEGSEDTRKTISQLFAKNKESQR-EKEKL 554
Query: 224 VAEL-NRRSLTEAEREYL 174
AEL RS E +R ++
Sbjct: 555 EAELATARSTNEDQRRHI 572
>AF286598-1|AAG01851.1| 675|Homo sapiens angiomotin protein.
Length = 675
Score = 32.7 bits (71), Expect = 1.8
Identities = 33/138 (23%), Positives = 71/138 (51%), Gaps = 3/138 (2%)
Frame = -3
Query: 578 LKSCLDFCYEKVYSERPLNLEMITIAKTLENSYFNYCSRIDVIRNVTIRNAIQRCEEVE- 402
L+ L+ CYEKV + + E+ +++ EN ++++ + R A+++ +
Sbjct: 39 LRQELEGCYEKVARLQKVETEIQRVSEAYEN----------LVKSSSKREALEKAMRNKL 88
Query: 401 KKKLQRAYEANQELQIFNRLQKHLTRAFEPKYD-SKNKLSLLPIVFRNEKTKKRSEKIKS 225
+ +++R ++ N++L+ RL+ + E +Y+ S++ + +F K +R EK K
Sbjct: 89 EGEIRRMHDFNRDLR--ERLETANKQLAEKEYEGSEDTRKTISQLFAKNKESQR-EKEKL 145
Query: 224 VAEL-NRRSLTEAEREYL 174
AEL RS E +R ++
Sbjct: 146 EAELATARSTNEDQRRHI 163
>AB028994-1|BAA83023.3| 675|Homo sapiens KIAA1071 protein protein.
Length = 675
Score = 32.7 bits (71), Expect = 1.8
Identities = 33/138 (23%), Positives = 71/138 (51%), Gaps = 3/138 (2%)
Frame = -3
Query: 578 LKSCLDFCYEKVYSERPLNLEMITIAKTLENSYFNYCSRIDVIRNVTIRNAIQRCEEVE- 402
L+ L+ CYEKV + + E+ +++ EN ++++ + R A+++ +
Sbjct: 39 LRQELEGCYEKVARLQKVETEIQRVSEAYEN----------LVKSSSKREALEKAMRNKL 88
Query: 401 KKKLQRAYEANQELQIFNRLQKHLTRAFEPKYD-SKNKLSLLPIVFRNEKTKKRSEKIKS 225
+ +++R ++ N++L+ RL+ + E +Y+ S++ + +F K +R EK K
Sbjct: 89 EGEIRRMHDFNRDLR--ERLETANKQLAEKEYEGSEDTRKTISQLFAKNKESQR-EKEKL 145
Query: 224 VAEL-NRRSLTEAEREYL 174
AEL RS E +R ++
Sbjct: 146 EAELATARSTNEDQRRHI 163
>AB033102-1|BAA86590.1| 1068|Homo sapiens KIAA1276 protein protein.
Length = 1068
Score = 32.3 bits (70), Expect = 2.4
Identities = 30/109 (27%), Positives = 53/109 (48%), Gaps = 7/109 (6%)
Frame = -3
Query: 458 DVIRNVTIR-NAIQRCEEVEKKKLQRAYEANQELQIFNRLQKHLTRAFEPKYDSKNKL-- 288
D+++ T+ +++ E E+KKLQR EA E ++ + +K + + E K KL
Sbjct: 442 DLVKKHTVEIKSVRSSVEAERKKLQREVEAQLE-EVRKKSEKEIKQLEEEKAALNVKLQN 500
Query: 287 SLLPIV----FRNEKTKKRSEKIKSVAELNRRSLTEAEREYLCLFTDWT 153
SLL ++ F + + + +S EL R+ + E + CL D T
Sbjct: 501 SLLEVLRLEEFIQQNKTRPTGAEESPQELGRQHCSILETQDPCLKLDET 549
>BC112391-1|AAI12392.1| 957|Homo sapiens ELKS/RAB6-interacting/CAST
family member 2 protein.
Length = 957
Score = 31.9 bits (69), Expect = 3.1
Identities = 41/207 (19%), Positives = 87/207 (42%), Gaps = 6/207 (2%)
Frame = -3
Query: 788 LQPFIKLLQERIIELKQLMKQDTDSVASTIEKFNSLLLFNE---ERCSQLEMKFFKVLN- 621
LQ + + +I+LK+ + K SL + E E CS+LE + K N
Sbjct: 632 LQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIAIEQKKEECSKLEAQLKKAHNI 691
Query: 620 --ESFYDDVGAFHVLKLKSCLDFCYEKVYSERPLNLEMITIAKTLENSYFNYCSRIDVIR 447
+S + A + +L + ++ + ++ I K +EN + +I +
Sbjct: 692 EDDSRMNPEFADQIKQLDKEASYYRDECGKAQAEVDRLLEILKEVENEKNDKDKKIAELE 751
Query: 446 NVTIRNAIQRCEEVEKKKLQRAYEANQELQIFNRLQKHLTRAFEPKYDSKNKLSLLPIVF 267
++T+R+ + ++V K + E + Q+ ++ R + D+ L + ++
Sbjct: 752 SLTLRHMKDQNKKVANLKHNQQLEKKKNAQLLEEVR----RREDSMADNSQHLQIEELMN 807
Query: 266 RNEKTKKRSEKIKSVAELNRRSLTEAE 186
EKT++ + K+ ++SL E E
Sbjct: 808 ALEKTRQELDATKARLASTQQSLAEKE 834
>BC111550-1|AAI11551.1| 957|Homo sapiens ERC2 protein protein.
Length = 957
Score = 31.9 bits (69), Expect = 3.1
Identities = 41/207 (19%), Positives = 87/207 (42%), Gaps = 6/207 (2%)
Frame = -3
Query: 788 LQPFIKLLQERIIELKQLMKQDTDSVASTIEKFNSLLLFNE---ERCSQLEMKFFKVLN- 621
LQ + + +I+LK+ + K SL + E E CS+LE + K N
Sbjct: 632 LQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIAIEQKKEECSKLEAQLKKAHNI 691
Query: 620 --ESFYDDVGAFHVLKLKSCLDFCYEKVYSERPLNLEMITIAKTLENSYFNYCSRIDVIR 447
+S + A + +L + ++ + ++ I K +EN + +I +
Sbjct: 692 EDDSRMNPEFADQIKQLDKEASYYRDECGKAQAEVDRLLEILKEVENEKNDKDKKIAELE 751
Query: 446 NVTIRNAIQRCEEVEKKKLQRAYEANQELQIFNRLQKHLTRAFEPKYDSKNKLSLLPIVF 267
++T+R+ + ++V K + E + Q+ ++ R + D+ L + ++
Sbjct: 752 SLTLRHMKDQNKKVANLKHNQQLEKKKNAQLLEEVR----RREDSMADNSQHLQIEELMN 807
Query: 266 RNEKTKKRSEKIKSVAELNRRSLTEAE 186
EKT++ + K+ ++SL E E
Sbjct: 808 ALEKTRQELDATKARLASTQQSLAEKE 834
>BC046520-1|AAH46520.1| 901|Homo sapiens SNX14 protein protein.
Length = 901
Score = 31.9 bits (69), Expect = 3.1
Identities = 28/105 (26%), Positives = 48/105 (45%), Gaps = 3/105 (2%)
Frame = -3
Query: 713 VASTIEKFNSLLLFNEERCSQLEMKFFKVLNESFYDDVGAFHVLKLKSCLDFCYEKVYSE 534
+A K S+L ++ + + F+ +N F GA HVL+ ++ +++
Sbjct: 286 IAEPRNKKPSVLKLELKQIREQQDPLFRFMN--FLKQEGAVHVLQFCLTVEEFNDRILRP 343
Query: 533 RPLNLEMITIAKTLENSYFNYC--SRIDVIR-NVTIRNAIQRCEE 408
N EM+++ + L+ Y YC ID IR + I IQR E
Sbjct: 344 ELSNDEMLSLHEELQKIYKTYCLDESIDKIRFDPFIVEEIQRIAE 388
>AB002376-1|BAA20832.2| 970|Homo sapiens KIAA0378 protein.
Length = 970
Score = 31.9 bits (69), Expect = 3.1
Identities = 41/207 (19%), Positives = 87/207 (42%), Gaps = 6/207 (2%)
Frame = -3
Query: 788 LQPFIKLLQERIIELKQLMKQDTDSVASTIEKFNSLLLFNE---ERCSQLEMKFFKVLN- 621
LQ + + +I+LK+ + K SL + E E CS+LE + K N
Sbjct: 645 LQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIAIEQKKEECSKLEAQLKKAHNI 704
Query: 620 --ESFYDDVGAFHVLKLKSCLDFCYEKVYSERPLNLEMITIAKTLENSYFNYCSRIDVIR 447
+S + A + +L + ++ + ++ I K +EN + +I +
Sbjct: 705 EDDSRMNPEFADQIKQLDKEASYYRDECGKAQAEVDRLLEILKEVENEKNDKDKKIAELE 764
Query: 446 NVTIRNAIQRCEEVEKKKLQRAYEANQELQIFNRLQKHLTRAFEPKYDSKNKLSLLPIVF 267
++T+R+ + ++V K + E + Q+ ++ R + D+ L + ++
Sbjct: 765 SLTLRHMKDQNKKVANLKHNQQLEKKKNAQLLEEVR----RREDSMADNSQHLQIEELMN 820
Query: 266 RNEKTKKRSEKIKSVAELNRRSLTEAE 186
EKT++ + K+ ++SL E E
Sbjct: 821 ALEKTRQELDATKARLASTQQSLAEKE 847
>BC146785-1|AAI46786.1| 1556|Homo sapiens INOC1 protein protein.
Length = 1556
Score = 31.5 bits (68), Expect = 4.1
Identities = 20/66 (30%), Positives = 32/66 (48%)
Frame = -3
Query: 401 KKKLQRAYEANQELQIFNRLQKHLTRAFEPKYDSKNKLSLLPIVFRNEKTKKRSEKIKSV 222
KK Q Y ++ELQ + L ++P Y+ + L L P + ++ KK K+K V
Sbjct: 167 KKLHQNKYSKDKELQQYQYYSAGLLSTYDPFYEQQRHL-LGPKKKKFKEEKKLKAKLKKV 225
Query: 221 AELNRR 204
+ RR
Sbjct: 226 KKKRRR 231
>AB033085-1|BAA86573.1| 1561|Homo sapiens KIAA1259 protein protein.
Length = 1561
Score = 31.5 bits (68), Expect = 4.1
Identities = 20/66 (30%), Positives = 32/66 (48%)
Frame = -3
Query: 401 KKKLQRAYEANQELQIFNRLQKHLTRAFEPKYDSKNKLSLLPIVFRNEKTKKRSEKIKSV 222
KK Q Y ++ELQ + L ++P Y+ + L L P + ++ KK K+K V
Sbjct: 172 KKLHQNKYSKDKELQQYQYYSAGLLSTYDPFYEQQRHL-LGPKKKKFKEEKKLKAKLKKV 230
Query: 221 AELNRR 204
+ RR
Sbjct: 231 KKKRRR 236
>AK097408-1|BAC05038.1| 563|Homo sapiens protein ( Homo sapiens cDNA
FLJ40089 fis, clone TESTI2003181. ).
Length = 563
Score = 31.1 bits (67), Expect = 5.5
Identities = 35/228 (15%), Positives = 90/228 (39%), Gaps = 1/228 (0%)
Frame = -3
Query: 872 YFSQAGDLMNIXDDIXKRQLHIFNYIFQLQPFIKLLQERIIELKQLMKQDTDSVASTIEK 693
YF + +L+ + ++ ++ L +F Y + ++ + +R ++ + + + +
Sbjct: 335 YFKEPEELLQVLRELEEQNLTLFQYSQDVDENLEEVNKREKVIQDKTNSNIEFLLEQEKM 394
Query: 692 FNSLLLFNEERCSQLEMKFFKVLNESFYDDVGAFHVLKLKSCLDFCYEKVYSE-RPLNLE 516
+ + EE+ ++L++K F D + L + Y+ + L
Sbjct: 395 LKANCVREEEKAAELQLKSKLFSFGEFNSDAQEILIDSLSKKITQVYKVCIGDAEDDGLN 454
Query: 515 MITIAKTLENSYFNYCSRIDVIRNVTIRNAIQRCEEVEKKKLQRAYEANQELQIFNRLQK 336
I +E+ C D+I ++ N ++ E +++K+ ++ + + + Q+
Sbjct: 455 PIQKLVKVESRLVELC---DLIESIPKEN-VEAIERMKQKEWRQKFRDEKMKEKQRHQQE 510
Query: 335 HLTRAFEPKYDSKNKLSLLPIVFRNEKTKKRSEKIKSVAELNRRSLTE 192
L A E K +VF ++ +++ V E +S E
Sbjct: 511 RLKAALEKAVAQPKKKLGRQLVFHSKPPSGNKQQLPLVNETKTKSQEE 558
>Z97054-3|CAI42646.1| 1233|Homo sapiens structural maintenance of
chromosomes 1A protein.
Length = 1233
Score = 30.7 bits (66), Expect = 7.2
Identities = 22/92 (23%), Positives = 48/92 (52%), Gaps = 3/92 (3%)
Frame = -3
Query: 449 RNVTIR-NAIQRCEEVEKKKLQRAYEANQELQIFNRLQK--HLTRAFEPKYDSKNKLSLL 279
R++T+ N +++ ++++ +RA QEL+ FNR QK E + + + +
Sbjct: 363 RDLTLEENQVKKYHRLKEEASKRAATLAQELEKFNRDQKADQDRLDLEERKKVETEAKIK 422
Query: 278 PIVFRNEKTKKRSEKIKSVAELNRRSLTEAER 183
+ E+ +KR EK++ +++SL E ++
Sbjct: 423 QKLREIEENQKRIEKLEEYITTSKQSLEEQKK 454
>S78271-1|AAB34405.1| 1233|Homo sapiens SB1.8/DXS423E protein.
Length = 1233
Score = 30.7 bits (66), Expect = 7.2
Identities = 22/92 (23%), Positives = 48/92 (52%), Gaps = 3/92 (3%)
Frame = -3
Query: 449 RNVTIR-NAIQRCEEVEKKKLQRAYEANQELQIFNRLQK--HLTRAFEPKYDSKNKLSLL 279
R++T+ N +++ ++++ +RA QEL+ FNR QK E + + + +
Sbjct: 363 RDLTLEENQVKKYHRLKEEASKRAATLAQELEKFNRDQKADQDRLDLEERKKVETEAKIK 422
Query: 278 PIVFRNEKTKKRSEKIKSVAELNRRSLTEAER 183
+ E+ +KR EK++ +++SL E ++
Sbjct: 423 QKLREIEENQKRIEKLEEYITTSKQSLEEQKK 454
>D80000-1|BAA11495.2| 1233|Homo sapiens KIAA0178 protein.
Length = 1233
Score = 30.7 bits (66), Expect = 7.2
Identities = 22/92 (23%), Positives = 48/92 (52%), Gaps = 3/92 (3%)
Frame = -3
Query: 449 RNVTIR-NAIQRCEEVEKKKLQRAYEANQELQIFNRLQK--HLTRAFEPKYDSKNKLSLL 279
R++T+ N +++ ++++ +RA QEL+ FNR QK E + + + +
Sbjct: 363 RDLTLEENQVKKYHRLKEEASKRAATLAQELEKFNRDQKADQDRLDLEERKKVETEAKIK 422
Query: 278 PIVFRNEKTKKRSEKIKSVAELNRRSLTEAER 183
+ E+ +KR EK++ +++SL E ++
Sbjct: 423 QKLREIEENQKRIEKLEEYITTSKQSLEEQKK 454
>BC112127-1|AAI12128.1| 1233|Homo sapiens SMC1 structural
maintenance of chromosomes 1-like 1 protein.
Length = 1233
Score = 30.7 bits (66), Expect = 7.2
Identities = 22/92 (23%), Positives = 48/92 (52%), Gaps = 3/92 (3%)
Frame = -3
Query: 449 RNVTIR-NAIQRCEEVEKKKLQRAYEANQELQIFNRLQK--HLTRAFEPKYDSKNKLSLL 279
R++T+ N +++ ++++ +RA QEL+ FNR QK E + + + +
Sbjct: 363 RDLTLEENQVKKYHRLKEEASKRAATLAQELEKFNRDQKADQDRLDLEERKKVETEAKIK 422
Query: 278 PIVFRNEKTKKRSEKIKSVAELNRRSLTEAER 183
+ E+ +KR EK++ +++SL E ++
Sbjct: 423 QKLREIEENQKRIEKLEEYITTSKQSLEEQKK 454
>BC095479-1|AAH95479.1| 563|Homo sapiens coiled-coil domain
containing 38 protein.
Length = 563
Score = 30.7 bits (66), Expect = 7.2
Identities = 35/228 (15%), Positives = 90/228 (39%), Gaps = 1/228 (0%)
Frame = -3
Query: 872 YFSQAGDLMNIXDDIXKRQLHIFNYIFQLQPFIKLLQERIIELKQLMKQDTDSVASTIEK 693
YF + +L+ + ++ ++ L +F Y + ++ + +R ++ + + + +
Sbjct: 335 YFKEPEELLQVLRELEEQNLTLFQYSQDVDENLEEVNKREKVIQDKTNSNIEFLLEQEKM 394
Query: 692 FNSLLLFNEERCSQLEMKFFKVLNESFYDDVGAFHVLKLKSCLDFCYEKVYSE-RPLNLE 516
+ + EE+ ++L++K F D + L + Y+ + L
Sbjct: 395 LKANCVREEEKAAELQLKSKLFSFGEFNSDAQEILIDSLSKKITQVYKVCIGDAEDDGLN 454
Query: 515 MITIAKTLENSYFNYCSRIDVIRNVTIRNAIQRCEEVEKKKLQRAYEANQELQIFNRLQK 336
I +E+ C D+I ++ N ++ E +++K+ ++ + + + Q+
Sbjct: 455 PIQKLVKVESRLVELC---DLIESIPKEN-VEAIERMKQKEWRQKFRDEKMKEKQRHQQE 510
Query: 335 HLTRAFEPKYDSKNKLSLLPIVFRNEKTKKRSEKIKSVAELNRRSLTE 192
L A E K +VF ++ +++ V E +S E
Sbjct: 511 RLKAALEKAVAQPKKKLGRRLVFHSKPPSGNKQQLPLVNETKTKSQEE 558
>BC064368-1|AAH64368.1| 847|Homo sapiens SMC1A protein protein.
Length = 847
Score = 30.7 bits (66), Expect = 7.2
Identities = 22/92 (23%), Positives = 48/92 (52%), Gaps = 3/92 (3%)
Frame = -3
Query: 449 RNVTIR-NAIQRCEEVEKKKLQRAYEANQELQIFNRLQK--HLTRAFEPKYDSKNKLSLL 279
R++T+ N +++ ++++ +RA QEL+ FNR QK E + + + +
Sbjct: 363 RDLTLEENQVKKYHRLKEEASKRAATLAQELEKFNRDQKADQDRLDLEERKKVETEAKIK 422
Query: 278 PIVFRNEKTKKRSEKIKSVAELNRRSLTEAER 183
+ E+ +KR EK++ +++SL E ++
Sbjct: 423 QKLREIEENQKRIEKLEEYITTSKQSLEEQKK 454
>AL161779-1|CAI42089.1| 1233|Homo sapiens structural maintenance of
chromosomes 1A protein.
Length = 1233
Score = 30.7 bits (66), Expect = 7.2
Identities = 22/92 (23%), Positives = 48/92 (52%), Gaps = 3/92 (3%)
Frame = -3
Query: 449 RNVTIR-NAIQRCEEVEKKKLQRAYEANQELQIFNRLQK--HLTRAFEPKYDSKNKLSLL 279
R++T+ N +++ ++++ +RA QEL+ FNR QK E + + + +
Sbjct: 363 RDLTLEENQVKKYHRLKEEASKRAATLAQELEKFNRDQKADQDRLDLEERKKVETEAKIK 422
Query: 278 PIVFRNEKTKKRSEKIKSVAELNRRSLTEAER 183
+ E+ +KR EK++ +++SL E ++
Sbjct: 423 QKLREIEENQKRIEKLEEYITTSKQSLEEQKK 454
>AF221130-1|AAF32366.1| 1556|Homo sapiens chromatin remodeling
factor WCRF180 protein.
Length = 1556
Score = 30.7 bits (66), Expect = 7.2
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = -3
Query: 311 KYDSKNKLSLLPIVFRNEKTKKRSEK--IKSVAELNRRSLTEAEREYLCLFTDWTE 150
K D + K L + E+ KK+ EK +K E R L E +R+Y+ W++
Sbjct: 342 KEDKEKKREELKKIVEEERLKKKEEKERLKVEREKEREKLREEKRKYVEYLKQWSK 397
>AF213467-1|AAF70601.1| 1556|Homo sapiens ATP-dependent chromatin
remodelling protein protein.
Length = 1556
Score = 30.7 bits (66), Expect = 7.2
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = -3
Query: 311 KYDSKNKLSLLPIVFRNEKTKKRSEK--IKSVAELNRRSLTEAEREYLCLFTDWTE 150
K D + K L + E+ KK+ EK +K E R L E +R+Y+ W++
Sbjct: 342 KEDKEKKREELKKIVEEERLKKKEEKERLKVEREKEREKLREEKRKYVEYLKQWSK 397
>AB032252-1|BAA89209.1| 1674|Homo sapiens bromodomain adjacent to
zinc finger domain 1A protein.
Length = 1674
Score = 30.7 bits (66), Expect = 7.2
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = -3
Query: 311 KYDSKNKLSLLPIVFRNEKTKKRSEK--IKSVAELNRRSLTEAEREYLCLFTDWTE 150
K D + K L + E+ KK+ EK +K E R L E +R+Y+ W++
Sbjct: 492 KEDKEKKREELKKIVEEERLKKKEEKERLKVEREKEREKLREEKRKYVEYLKQWSK 547
>BC095419-1|AAH95419.1| 946|Homo sapiens sorting nexin 14 protein.
Length = 946
Score = 30.3 bits (65), Expect = 9.5
Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 3/96 (3%)
Frame = -3
Query: 686 SLLLFNEERCSQLEMKFFKVLNESFYDDVGAFHVLKLKSCLDFCYEKVYSERPLNLEMIT 507
S+L ++ + + F+ +N F GA HVL+ ++ +++ N EM++
Sbjct: 331 SVLKLELKQIREQQDLLFRFMN--FLKQEGAVHVLQFCLTVEEFNDRILRPELSNDEMLS 388
Query: 506 IAKTLENSYFNYC--SRIDVIR-NVTIRNAIQRCEE 408
+ + L+ Y YC ID IR + I IQR E
Sbjct: 389 LHEELQKIYKTYCLDESIDKIRFDPFIVEEIQRIAE 424
>BC068589-1|AAH68589.1| 946|Homo sapiens sorting nexin 14 protein.
Length = 946
Score = 30.3 bits (65), Expect = 9.5
Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 3/96 (3%)
Frame = -3
Query: 686 SLLLFNEERCSQLEMKFFKVLNESFYDDVGAFHVLKLKSCLDFCYEKVYSERPLNLEMIT 507
S+L ++ + + F+ +N F GA HVL+ ++ +++ N EM++
Sbjct: 331 SVLKLELKQIREQQDLLFRFMN--FLKQEGAVHVLQFCLTVEEFNDRILRPELSNDEMLS 388
Query: 506 IAKTLENSYFNYC--SRIDVIR-NVTIRNAIQRCEE 408
+ + L+ Y YC ID IR + I IQR E
Sbjct: 389 LHEELQKIYKTYCLDESIDKIRFDPFIVEEIQRIAE 424
>BC005110-1|AAH05110.2| 893|Homo sapiens sorting nexin 14 protein.
Length = 893
Score = 30.3 bits (65), Expect = 9.5
Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 3/96 (3%)
Frame = -3
Query: 686 SLLLFNEERCSQLEMKFFKVLNESFYDDVGAFHVLKLKSCLDFCYEKVYSERPLNLEMIT 507
S+L ++ + + F+ +N F GA HVL+ ++ +++ N EM++
Sbjct: 287 SVLKLELKQIREQQDLLFRFMN--FLKQEGAVHVLQFCLTVEEFNDRILRPELSNDEMLS 344
Query: 506 IAKTLENSYFNYC--SRIDVIR-NVTIRNAIQRCEE 408
+ + L+ Y YC ID IR + I IQR E
Sbjct: 345 LHEELQKIYKTYCLDESIDKIRFDPFIVEEIQRIAE 380
>AY044865-1|AAK97796.1| 886|Homo sapiens sorting nexin 14 protein.
Length = 886
Score = 30.3 bits (65), Expect = 9.5
Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 3/96 (3%)
Frame = -3
Query: 686 SLLLFNEERCSQLEMKFFKVLNESFYDDVGAFHVLKLKSCLDFCYEKVYSERPLNLEMIT 507
S+L ++ + + F+ +N F GA HVL+ ++ +++ N EM++
Sbjct: 280 SVLKLELKQIREQQDLLFRFMN--FLKQEGAVHVLQFCLTVEEFNDRILRPELSNDEMLS 337
Query: 506 IAKTLENSYFNYC--SRIDVIR-NVTIRNAIQRCEE 408
+ + L+ Y YC ID IR + I IQR E
Sbjct: 338 LHEELQKIYKTYCLDESIDKIRFDPFIVEEIQRIAE 373
>AL589666-2|CAI40162.1| 886|Homo sapiens RP11-321N4.2 protein.
Length = 886
Score = 30.3 bits (65), Expect = 9.5
Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 3/96 (3%)
Frame = -3
Query: 686 SLLLFNEERCSQLEMKFFKVLNESFYDDVGAFHVLKLKSCLDFCYEKVYSERPLNLEMIT 507
S+L ++ + + F+ +N F GA HVL+ ++ +++ N EM++
Sbjct: 280 SVLKLELKQIREQQDLLFRFMN--FLKQEGAVHVLQFCLTVEEFNDRILRPELSNDEMLS 337
Query: 506 IAKTLENSYFNYC--SRIDVIR-NVTIRNAIQRCEE 408
+ + L+ Y YC ID IR + I IQR E
Sbjct: 338 LHEELQKIYKTYCLDESIDKIRFDPFIVEEIQRIAE 373
>AL589666-1|CAI40163.1| 939|Homo sapiens RP11-321N4.2 protein.
Length = 939
Score = 30.3 bits (65), Expect = 9.5
Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 3/96 (3%)
Frame = -3
Query: 686 SLLLFNEERCSQLEMKFFKVLNESFYDDVGAFHVLKLKSCLDFCYEKVYSERPLNLEMIT 507
S+L ++ + + F+ +N F GA HVL+ ++ +++ N EM++
Sbjct: 324 SVLKLELKQIREQQDLLFRFMN--FLKQEGAVHVLQFCLTVEEFNDRILRPELSNDEMLS 381
Query: 506 IAKTLENSYFNYC--SRIDVIR-NVTIRNAIQRCEE 408
+ + L+ Y YC ID IR + I IQR E
Sbjct: 382 LHEELQKIYKTYCLDESIDKIRFDPFIVEEIQRIAE 417
>AL136082-2|CAI20444.1| 886|Homo sapiens RP11-321N4.2 protein.
Length = 886
Score = 30.3 bits (65), Expect = 9.5
Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 3/96 (3%)
Frame = -3
Query: 686 SLLLFNEERCSQLEMKFFKVLNESFYDDVGAFHVLKLKSCLDFCYEKVYSERPLNLEMIT 507
S+L ++ + + F+ +N F GA HVL+ ++ +++ N EM++
Sbjct: 280 SVLKLELKQIREQQDLLFRFMN--FLKQEGAVHVLQFCLTVEEFNDRILRPELSNDEMLS 337
Query: 506 IAKTLENSYFNYC--SRIDVIR-NVTIRNAIQRCEE 408
+ + L+ Y YC ID IR + I IQR E
Sbjct: 338 LHEELQKIYKTYCLDESIDKIRFDPFIVEEIQRIAE 373
>AL136082-1|CAI20445.1| 939|Homo sapiens RP11-321N4.2 protein.
Length = 939
Score = 30.3 bits (65), Expect = 9.5
Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 3/96 (3%)
Frame = -3
Query: 686 SLLLFNEERCSQLEMKFFKVLNESFYDDVGAFHVLKLKSCLDFCYEKVYSERPLNLEMIT 507
S+L ++ + + F+ +N F GA HVL+ ++ +++ N EM++
Sbjct: 324 SVLKLELKQIREQQDLLFRFMN--FLKQEGAVHVLQFCLTVEEFNDRILRPELSNDEMLS 381
Query: 506 IAKTLENSYFNYC--SRIDVIR-NVTIRNAIQRCEE 408
+ + L+ Y YC ID IR + I IQR E
Sbjct: 382 LHEELQKIYKTYCLDESIDKIRFDPFIVEEIQRIAE 417
>AB209693-1|BAD92930.1| 1310|Homo sapiens golgi autoantigen, golgin
subfamily a, 4 variant protein.
Length = 1310
Score = 30.3 bits (65), Expect = 9.5
Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 12/88 (13%)
Frame = -3
Query: 845 NIXDDIXKRQLHIFNYIFQLQPFIK---LLQERIIELKQLMKQD-------TDSVASTIE 696
++ D K + H+ L +K LQE+++ELK L ++D T + +T E
Sbjct: 1155 SLAQDETKLKAHLEKLEVDLNKSLKENTFLQEQLVELKMLAEEDKRKVSELTSKLKTTDE 1214
Query: 695 KFNSLLLFNEERCSQLEMKF--FKVLNE 618
+F SL +E+ LE K FK L+E
Sbjct: 1215 EFQSLKSSHEKSNKSLEDKSLEFKKLSE 1242
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,776,888
Number of Sequences: 237096
Number of extensions: 1812289
Number of successful extensions: 3887
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 3742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3880
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11104084400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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