Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10a13
(874 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U12965-3|AAZ32811.1| 980|Caenorhabditis elegans Hypothetical pr... 32 0.62
Z48543-1|CAA88432.1| 645|Caenorhabditis elegans Hypothetical pr... 30 1.9
Z93377-11|CAM84803.1| 332|Caenorhabditis elegans Hypothetical p... 30 2.5
Z81513-15|CAM84808.1| 332|Caenorhabditis elegans Hypothetical p... 30 2.5
Z66514-5|CAA91344.1| 1133|Caenorhabditis elegans Hypothetical pr... 30 2.5
Z34801-9|CAA84332.1| 1133|Caenorhabditis elegans Hypothetical pr... 30 2.5
U41010-3|AAF98587.1| 655|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z49128-6|CAA88957.1| 621|Caenorhabditis elegans Hypothetical pr... 29 4.3
AL033514-22|CAA22106.3| 1353|Caenorhabditis elegans Hypothetical... 29 4.3
AF183401-1|AAF13189.1| 1353|Caenorhabditis elegans TIM-1 protein. 29 4.3
AF043702-4|AAK21494.2| 430|Caenorhabditis elegans Hypothetical ... 29 5.7
Z73973-5|CAA98267.2| 882|Caenorhabditis elegans Hypothetical pr... 28 7.6
U88173-4|AAK21386.1| 126|Caenorhabditis elegans Vacuolar h atpa... 28 7.6
U23517-10|AAB93341.3| 337|Caenorhabditis elegans Carbonic anhyd... 28 7.6
AF003130-13|AAK73876.1| 220|Caenorhabditis elegans Hypothetical... 28 7.6
>U12965-3|AAZ32811.1| 980|Caenorhabditis elegans Hypothetical
protein F23F12.8 protein.
Length = 980
Score = 31.9 bits (69), Expect = 0.62
Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Frame = -3
Query: 422 QRCEEVEKKKLQRAYEAN--QELQIFNRL--QKHLTRAFEPKYDSKNKLSLLPIVFRNEK 255
Q+ E+ +KKKL++ E QE + NR+ +K + + + KNK +L + +
Sbjct: 490 QQEEDQKKKKLEKDREQREQQEAEELNRMIIEKEMKENKQKMIEEKNKRKMLEKEMEDRQ 549
Query: 254 TKKRSEKIKSVAELNRRSLTEAE 186
E+ + +AE RR E E
Sbjct: 550 NAIYEEEERRIAEEERRKQIEIE 572
>Z48543-1|CAA88432.1| 645|Caenorhabditis elegans Hypothetical
protein C18D1.1 protein.
Length = 645
Score = 30.3 bits (65), Expect = 1.9
Identities = 24/85 (28%), Positives = 39/85 (45%)
Frame = -3
Query: 449 RNVTIRNAIQRCEEVEKKKLQRAYEANQELQIFNRLQKHLTRAFEPKYDSKNKLSLLPIV 270
R++ + A R +E E LQ EA ++ + N+ Q YD + + L +
Sbjct: 500 RHIKMSEAKGRGDEDEDVALQLTTEAALQMVVQNQNQ----------YDGDSTAAALNLT 549
Query: 269 FRNEKTKKRSEKIKSVAELNRRSLT 195
F+N+ TKK E+ K+ R S T
Sbjct: 550 FKNDGTKKEIEEEKATGNHERNSHT 574
>Z93377-11|CAM84803.1| 332|Caenorhabditis elegans Hypothetical
protein F13A7.14 protein.
Length = 332
Score = 29.9 bits (64), Expect = 2.5
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 6/71 (8%)
Frame = -3
Query: 803 NYIFQLQPFIKLLQERIIELKQLMKQDTDSVASTIEKFNSLLLFNEERCSQLEMK----- 639
NY+ L + ++++L +++ D +EK+ S E+RC QLEM+
Sbjct: 133 NYVHNAMENFNLNMPSVSDVEKL-RRERDQFKKEMEKYRSKCEKLEKRCEQLEMEKKNSV 191
Query: 638 -FFKVLNESFY 609
F+ N +FY
Sbjct: 192 PVFQPFNSNFY 202
>Z81513-15|CAM84808.1| 332|Caenorhabditis elegans Hypothetical
protein F13A7.14 protein.
Length = 332
Score = 29.9 bits (64), Expect = 2.5
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 6/71 (8%)
Frame = -3
Query: 803 NYIFQLQPFIKLLQERIIELKQLMKQDTDSVASTIEKFNSLLLFNEERCSQLEMK----- 639
NY+ L + ++++L +++ D +EK+ S E+RC QLEM+
Sbjct: 133 NYVHNAMENFNLNMPSVSDVEKL-RRERDQFKKEMEKYRSKCEKLEKRCEQLEMEKKNSV 191
Query: 638 -FFKVLNESFY 609
F+ N +FY
Sbjct: 192 PVFQPFNSNFY 202
>Z66514-5|CAA91344.1| 1133|Caenorhabditis elegans Hypothetical protein
F59A2.6 protein.
Length = 1133
Score = 29.9 bits (64), Expect = 2.5
Identities = 20/76 (26%), Positives = 39/76 (51%)
Frame = -3
Query: 401 KKKLQRAYEANQELQIFNRLQKHLTRAFEPKYDSKNKLSLLPIVFRNEKTKKRSEKIKSV 222
++KL++A + E +R + A + K +S+ KL L + ++ +++ KIK +
Sbjct: 835 EEKLKKAQNSQDEASE-SRFKTLEASAEQAKLESEQKLRALEELLKSSESEIEELKIKEI 893
Query: 221 AELNRRSLTEAEREYL 174
+ RS E E+E L
Sbjct: 894 SAEKDRSHWEVEKEML 909
Score = 29.1 bits (62), Expect = 4.3
Identities = 20/83 (24%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Frame = -3
Query: 422 QRCEEVEKKKLQRAYEANQELQIFNRLQKHLTRAFEPKYDSKNKLSLL--PIVFRNEKTK 249
++CEE+ K Q E N+ +Q +RLQ+ + + N+ L I + +
Sbjct: 23 EKCEELTLKFEQADKEKNEMVQQLSRLQQEMLEKCDALQAEVNEAKALREEIQAKYDDVT 82
Query: 248 KRSEKIKSVAELNRRSLTEAERE 180
+++E+I+ E +++ L E+E++
Sbjct: 83 QKAERIQGELEESKKVL-ESEKQ 104
>Z34801-9|CAA84332.1| 1133|Caenorhabditis elegans Hypothetical protein
F59A2.6 protein.
Length = 1133
Score = 29.9 bits (64), Expect = 2.5
Identities = 20/76 (26%), Positives = 39/76 (51%)
Frame = -3
Query: 401 KKKLQRAYEANQELQIFNRLQKHLTRAFEPKYDSKNKLSLLPIVFRNEKTKKRSEKIKSV 222
++KL++A + E +R + A + K +S+ KL L + ++ +++ KIK +
Sbjct: 835 EEKLKKAQNSQDEASE-SRFKTLEASAEQAKLESEQKLRALEELLKSSESEIEELKIKEI 893
Query: 221 AELNRRSLTEAEREYL 174
+ RS E E+E L
Sbjct: 894 SAEKDRSHWEVEKEML 909
Score = 29.1 bits (62), Expect = 4.3
Identities = 20/83 (24%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Frame = -3
Query: 422 QRCEEVEKKKLQRAYEANQELQIFNRLQKHLTRAFEPKYDSKNKLSLL--PIVFRNEKTK 249
++CEE+ K Q E N+ +Q +RLQ+ + + N+ L I + +
Sbjct: 23 EKCEELTLKFEQADKEKNEMVQQLSRLQQEMLEKCDALQAEVNEAKALREEIQAKYDDVT 82
Query: 248 KRSEKIKSVAELNRRSLTEAERE 180
+++E+I+ E +++ L E+E++
Sbjct: 83 QKAERIQGELEESKKVL-ESEKQ 104
>U41010-3|AAF98587.1| 655|Caenorhabditis elegans Hypothetical
protein T05A12.3 protein.
Length = 655
Score = 29.5 bits (63), Expect = 3.3
Identities = 20/81 (24%), Positives = 39/81 (48%)
Frame = -3
Query: 422 QRCEEVEKKKLQRAYEANQELQIFNRLQKHLTRAFEPKYDSKNKLSLLPIVFRNEKTKKR 243
QR +E EK+K + +Q ++ + R +K + +P S + ++ KR
Sbjct: 450 QREKEREKQKSLKRARGDQMMKEYEREKKIQKTSEKPGPSSSSHKQSSSSSSKSNGDTKR 509
Query: 242 SEKIKSVAELNRRSLTEAERE 180
S + + +AEL + + E ER+
Sbjct: 510 SYEARRMAELREQQMREKERK 530
>Z49128-6|CAA88957.1| 621|Caenorhabditis elegans Hypothetical
protein M03C11.7 protein.
Length = 621
Score = 29.1 bits (62), Expect = 4.3
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Frame = -3
Query: 404 EKKKLQRAYEANQELQIFNRLQKHLTRAFEPKYDSKNKLSLLPIVFRNEKTKKRSEKIKS 225
EKKK++R + +++ L +A EPK N + +L + TK ++ K
Sbjct: 380 EKKKIRRQNRKEVLKEKTEKIRLGLEKAPEPKVKISNLMRVLGNEAIQDPTKMEAQVRKQ 439
Query: 224 VAE-LNRRSLTEAERE 180
+AE L + AER+
Sbjct: 440 MAERLKKHETLNAERK 455
>AL033514-22|CAA22106.3| 1353|Caenorhabditis elegans Hypothetical
protein Y75B8A.22 protein.
Length = 1353
Score = 29.1 bits (62), Expect = 4.3
Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 3/91 (3%)
Frame = -3
Query: 626 LNESFYDDVGAFHVLKLKSCLDFCYEKVYSERPL---NLEMITIAKTLENSYFNYCSRID 456
LNE ++ +LK + +D YEK E+PL + +I K L+ Y + ++
Sbjct: 1073 LNEDLGMEISRKKILKQLAHMDILYEKPKKEKPLPQWDTGLIEELKKLKEQYDDIPDALN 1132
Query: 455 VIRNVTIRNAIQRCEEVEKKKLQRAYEANQE 363
++ +R ++R E KK R E + E
Sbjct: 1133 MLGVNIVRYVMKRLSE---KKPTRQVERHLE 1160
>AF183401-1|AAF13189.1| 1353|Caenorhabditis elegans TIM-1 protein.
Length = 1353
Score = 29.1 bits (62), Expect = 4.3
Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 3/91 (3%)
Frame = -3
Query: 626 LNESFYDDVGAFHVLKLKSCLDFCYEKVYSERPL---NLEMITIAKTLENSYFNYCSRID 456
LNE ++ +LK + +D YEK E+PL + +I K L+ Y + ++
Sbjct: 1073 LNEDLGMEISRKKILKQLAHMDILYEKPKKEKPLPQWDTGLIEELKKLKEQYDDIPDALN 1132
Query: 455 VIRNVTIRNAIQRCEEVEKKKLQRAYEANQE 363
++ +R ++R E KK R E + E
Sbjct: 1133 MLGVNIVRYVMKRLSE---KKPTRQVERHLE 1160
>AF043702-4|AAK21494.2| 430|Caenorhabditis elegans Hypothetical
protein W03D8.8 protein.
Length = 430
Score = 28.7 bits (61), Expect = 5.7
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = -3
Query: 674 FNEERCSQLEMKFFKVLNESFYDDVGAFHVLKLKSCLDFCY 552
F + ++++K+ K L S+YD L +K C DF Y
Sbjct: 48 FQADPAGRIDLKYAKPLRGSYYDADPMGLFLGMKPCEDFAY 88
>Z73973-5|CAA98267.2| 882|Caenorhabditis elegans Hypothetical
protein F25D1.4 protein.
Length = 882
Score = 28.3 bits (60), Expect = 7.6
Identities = 14/37 (37%), Positives = 25/37 (67%)
Frame = +1
Query: 82 VPTIPLQSLEKLRLFK*TAGSSCSVQSVNRHKYSRSA 192
V TIP+ + KLRL + + GS+ ++S + +YS++A
Sbjct: 266 VVTIPVNEVRKLRLHESSCGST-KMESFSEKEYSKAA 301
>U88173-4|AAK21386.1| 126|Caenorhabditis elegans Vacuolar h atpase
protein 10 protein.
Length = 126
Score = 28.3 bits (60), Expect = 7.6
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Frame = -3
Query: 434 RNAIQRCEEVEKKKLQRAYEANQELQI----FNRLQKHLTRAFEPKY 306
+ A ++ E K+KLQR +A QE Q + + ++ +AFE +Y
Sbjct: 16 KRAAEKINEARKRKLQRTKQAKQEAQAEVEKYKQQREAEFKAFEQQY 62
>U23517-10|AAB93341.3| 337|Caenorhabditis elegans Carbonic
anhydrase protein 2 protein.
Length = 337
Score = 28.3 bits (60), Expect = 7.6
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -3
Query: 380 YEANQELQIFNRLQKHLTRAFEPKY 306
Y N +LQI+N +QK T+ EP Y
Sbjct: 230 YITNDDLQIWNEMQKTETKQPEPSY 254
>AF003130-13|AAK73876.1| 220|Caenorhabditis elegans Hypothetical
protein F55A12.10 protein.
Length = 220
Score = 28.3 bits (60), Expect = 7.6
Identities = 16/58 (27%), Positives = 26/58 (44%)
Frame = -3
Query: 353 FNRLQKHLTRAFEPKYDSKNKLSLLPIVFRNEKTKKRSEKIKSVAELNRRSLTEAERE 180
F ++QK + E K K + + E+ + K+ S E NR+ L + ERE
Sbjct: 84 FQKIQKSIQLKMENKKSVMRKEQTKKVEKKTEEMHCQLSKLTSFEENNRKKLEDIERE 141
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,574,568
Number of Sequences: 27780
Number of extensions: 350600
Number of successful extensions: 1153
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1089
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1152
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2192413762
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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