Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10a12
(723 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0283 + 13887388-13887573,13887711-13887806,13888517-138886... 30 2.1
08_02_1482 - 27428208-27428514,27428605-27428906,27431176-274322... 29 2.8
03_05_0028 - 19988940-19989477,19989631-19989673,19990956-199910... 29 2.8
04_01_0492 + 6476586-6476873,6477414-6477686,6477769-6477948,647... 28 6.5
07_01_1133 - 10550799-10551137,10552195-10552254,10555693-105574... 28 8.6
05_01_0167 - 1153778-1153927,1154006-1154797,1155602-1156408,115... 28 8.6
04_03_0588 + 17595299-17596151,17597519-17597665,17598562-175988... 28 8.6
01_06_1261 - 35826513-35828941,35829201-35829294 28 8.6
01_01_0908 + 7158172-7158356,7159436-7159866,7159953-7161061,716... 28 8.6
>04_03_0283 +
13887388-13887573,13887711-13887806,13888517-13888637,
13888734-13888840,13888949-13889166,13890219-13890396,
13890492-13890611,13891601-13891687,13892401-13892511,
13892618-13893439
Length = 681
Score = 29.9 bits (64), Expect = 2.1
Identities = 21/77 (27%), Positives = 35/77 (45%)
Frame = -3
Query: 661 IYIAKHSYYTATKDVLNKQKLSFSYHFLAISKMSTKYHKNCTKDPNELEDPTRKQPDEQL 482
IY+++ S YT + + Q LS Y+F+ S +K K +E P R+ DE L
Sbjct: 211 IYLSRSSKYTG--NYVMHQTLSTYYYFMKPSLAPSKVMDVFIKAAEYMEMPVRRSDDEPL 268
Query: 481 TRKLKPLTTKPLCDCSN 431
+ + ++ D N
Sbjct: 269 QKLFVAVRSELNLDLKN 285
>08_02_1482 -
27428208-27428514,27428605-27428906,27431176-27432228,
27432305-27432421,27432510-27432843,27433064-27433188,
27433408-27433475,27433555-27433636,27433753-27433866,
27433942-27434042,27434145-27434234,27434615-27434819
Length = 965
Score = 29.5 bits (63), Expect = 2.8
Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Frame = -3
Query: 667 QCIYIAKHSYYTATK-DVLNKQKLSFSYHFLAISKMSTKY---HKNCTKDPNELEDPTRK 500
QCI I +H T+ K D+L Q F L ISK + + N +EDPTR
Sbjct: 521 QCIDIHEHRRSTSHKFDLLLPQDTEFQTPELEISKEAVPQPDEDQELESITNRMEDPTRM 580
Query: 499 QPDEQ 485
P E+
Sbjct: 581 CPVEE 585
>03_05_0028 -
19988940-19989477,19989631-19989673,19990956-19991037,
19991063-19991122
Length = 240
Score = 29.5 bits (63), Expect = 2.8
Identities = 26/107 (24%), Positives = 50/107 (46%), Gaps = 15/107 (14%)
Frame = -3
Query: 415 CPDVL--KTFSINVTEDSCDF---GTKKVEQIDESSHEVS----IK--DCQSLLDVLN-- 275
CPD L K F++ V E+ ++++++ + ++S IK DC L+ L+
Sbjct: 113 CPDFLELKVFALYVDEEMASIICNSLPRLKKLEIPNSDMSCAAIIKFLDCLEELEYLDIS 172
Query: 274 --NTRNCTCEIIAKVVRSNVYIHRGKHKVSDIIDETNVANVSIKPEE 140
T + ++ K R N++I K ++ + D +N I P+E
Sbjct: 173 GYETSAISSAVLQKASRLNIFIWNSKFELGEFTDCSNCGEHCINPQE 219
>04_01_0492 +
6476586-6476873,6477414-6477686,6477769-6477948,
6478436-6478696,6479171-6479303,6479404-6479494,
6479921-6480023,6480557-6480660,6480809-6480902,
6480985-6481140,6481224-6481286,6481388-6481453,
6481670-6481870,6481999-6482076,6482165-6482284,
6482382-6482462,6482548-6482633,6482920-6483031,
6483093-6483170,6483306-6483482
Length = 914
Score = 28.3 bits (60), Expect = 6.5
Identities = 17/63 (26%), Positives = 34/63 (53%)
Frame = -3
Query: 340 QIDESSHEVSIKDCQSLLDVLNNTRNCTCEIIAKVVRSNVYIHRGKHKVSDIIDETNVAN 161
Q++ SS S+K+ + L V+N+ + + A++++ V+ KH + D I + V N
Sbjct: 549 QLNSSSMTDSLKEALAELYVINSQYDKALSLYAELLKPEVFEFIEKHNLHDAIHD-KVVN 607
Query: 160 VSI 152
+ I
Sbjct: 608 LMI 610
>07_01_1133 -
10550799-10551137,10552195-10552254,10555693-10557401,
10557534-10557616,10577533-10578074
Length = 910
Score = 27.9 bits (59), Expect = 8.6
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -3
Query: 547 KNCTKDPNELEDPTRKQPDEQLTRKLKPLTTKPLCDC 437
K C + P E DP R + E LT KP+ +C+C
Sbjct: 746 KKCLRVPTEEADPERIEIQEDLTYVEKPVR---ICEC 779
>05_01_0167 - 1153778-1153927,1154006-1154797,1155602-1156408,
1156514-1156618,1156985-1157059,1157160-1157233,
1157388-1157450,1157549-1157647,1157704-1157811,
1157908-1157973,1158073-1158150,1158257-1158304,
1158381-1158440,1158527-1158610,1158902-1158949,
1159049-1159096,1161462-1161579
Length = 940
Score = 27.9 bits (59), Expect = 8.6
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Frame = -3
Query: 379 TEDSCDFGTKKVEQIDES-----SHEVSIKDCQSLLDVLNNTRNCTCEIIAKVVRSNVYI 215
T ++ F ++ E+IDE SHE D Q + NN+ + T E+ K N +I
Sbjct: 757 TVEAYKFLMEESEKIDEKLNTMFSHEFEGADKQQGHEE-NNSFSPTAEVNEK--SENTHI 813
Query: 214 HRGKHKVSDIIDETNVANVSIKPEE 140
H D I++ ++AN +P++
Sbjct: 814 HGDIRNEEDYIEDPDIANSKGRPKQ 838
>04_03_0588 +
17595299-17596151,17597519-17597665,17598562-17598837,
17599108-17599805
Length = 657
Score = 27.9 bits (59), Expect = 8.6
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -3
Query: 331 ESSHEVSIKDCQSLLDVLNNTRNCTCEIIAKVVRSNVY 218
ES+HE+ C+S +D L+ T IA ++ SN Y
Sbjct: 607 ESNHEIETPLCESYVD-LHQTMGVDINGIANLISSNCY 643
>01_06_1261 - 35826513-35828941,35829201-35829294
Length = 840
Score = 27.9 bits (59), Expect = 8.6
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = -3
Query: 580 LAISKMSTKYHKNCTKDPNELEDPTRKQPDE--QLTRKLKPLTTK 452
L I K + +YH + NEL+ + + DE L R L L TK
Sbjct: 511 LEIEKRNREYHLEAMSEMNELKSSSATKDDEIRSLRRMLSSLQTK 555
>01_01_0908 +
7158172-7158356,7159436-7159866,7159953-7161061,
7161372-7162820
Length = 1057
Score = 27.9 bits (59), Expect = 8.6
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Frame = -3
Query: 544 NCTKDPNELEDPTRKQPDEQ--LTRKLKPLTTKPLCDCSNCTCKD 416
N TKDPN + R Q EQ LT+ KP++ + N C++
Sbjct: 281 NLTKDPNPMSGKERDQVAEQCNLTKDPKPVSGQKCEQICNEPCEE 325
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,759,274
Number of Sequences: 37544
Number of extensions: 290466
Number of successful extensions: 759
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 734
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 759
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -