Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10a12
(723 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CR541770-1|CAG46569.1| 399|Homo sapiens TM7SF1 protein. 30 9.6
BC031242-1|AAH31242.1| 446|Homo sapiens coiled-coil domain cont... 30 9.6
BC012100-1|AAH12100.1| 399|Homo sapiens G protein-coupled recep... 30 9.6
AY242135-1|AAO92302.1| 399|Homo sapiens similar to transmembran... 30 9.6
AL139162-6|CAI23528.1| 399|Homo sapiens G protein-coupled recep... 30 9.6
AL139162-1|CAI23523.1| 229|Homo sapiens G protein-coupled recep... 30 9.6
AL122018-5|CAI22684.1| 399|Homo sapiens G protein-coupled recep... 30 9.6
AK223632-1|BAD97352.1| 399|Homo sapiens transmembrane 7 superfa... 30 9.6
AJ580807-1|CAE45342.1| 529|Homo sapiens mutated in bladder canc... 30 9.6
AF169796-1|AAF80856.1| 484|Homo sapiens zinc finger DNA binding... 30 9.6
AF027826-1|AAC39669.1| 399|Homo sapiens putative seven pass tra... 30 9.6
>CR541770-1|CAG46569.1| 399|Homo sapiens TM7SF1 protein.
Length = 399
Score = 29.9 bits (64), Expect = 9.6
Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Frame = +3
Query: 66 CFFSLTYCMYLLIQIKIASVYFEFYSSGLIDTFATLVSSMISET--LCFPLCI*TFDR 233
C SL+ C+Y + ++ +A++Y E S + A V+ ++ T C+ L I +F +
Sbjct: 205 CAVSLSICLYKISKMSLANIYLESKGSSVCQVTAIGVTVILLYTSRACYNLFILSFSQ 262
>BC031242-1|AAH31242.1| 446|Homo sapiens coiled-coil domain
containing 112 protein.
Length = 446
Score = 29.9 bits (64), Expect = 9.6
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = -3
Query: 574 ISKMSTKYHKNCTKDPNELEDPTRKQPDEQLTRKLKPLTTKPL 446
++K+ K N ++DP+ L PT+ E+ T+K+ P + PL
Sbjct: 387 LAKLKEKVENNVSRDPSRLYKPTKGW--EERTKKIGPTGSGPL 427
>BC012100-1|AAH12100.1| 399|Homo sapiens G protein-coupled receptor
137B protein.
Length = 399
Score = 29.9 bits (64), Expect = 9.6
Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Frame = +3
Query: 66 CFFSLTYCMYLLIQIKIASVYFEFYSSGLIDTFATLVSSMISET--LCFPLCI*TFDR 233
C SL+ C+Y + ++ +A++Y E S + A V+ ++ T C+ L I +F +
Sbjct: 205 CAVSLSICLYKISKMSLANIYLESKGSSVCQVTAIGVTVILLYTSRACYNLFILSFSQ 262
>AY242135-1|AAO92302.1| 399|Homo sapiens similar to transmembrane 7
superfamily member 1 protein.
Length = 399
Score = 29.9 bits (64), Expect = 9.6
Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Frame = +3
Query: 66 CFFSLTYCMYLLIQIKIASVYFEFYSSGLIDTFATLVSSMISET--LCFPLCI*TFDR 233
C SL+ C+Y + ++ +A++Y E S + A V+ ++ T C+ L I +F +
Sbjct: 205 CAVSLSICLYKISKMSLANIYLESKGSSVCQVTAIGVTVILLYTSRACYNLFILSFSQ 262
>AL139162-6|CAI23528.1| 399|Homo sapiens G protein-coupled receptor
137B protein.
Length = 399
Score = 29.9 bits (64), Expect = 9.6
Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Frame = +3
Query: 66 CFFSLTYCMYLLIQIKIASVYFEFYSSGLIDTFATLVSSMISET--LCFPLCI*TFDR 233
C SL+ C+Y + ++ +A++Y E S + A V+ ++ T C+ L I +F +
Sbjct: 205 CAVSLSICLYKISKMSLANIYLESKGSSVCQVTAIGVTVILLYTSRACYNLFILSFSQ 262
>AL139162-1|CAI23523.1| 229|Homo sapiens G protein-coupled receptor
137B protein.
Length = 229
Score = 29.9 bits (64), Expect = 9.6
Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Frame = +3
Query: 66 CFFSLTYCMYLLIQIKIASVYFEFYSSGLIDTFATLVSSMISET--LCFPLCI*TFDR 233
C SL+ C+Y + ++ +A++Y E S + A V+ ++ T C+ L I +F +
Sbjct: 68 CAVSLSICLYKISKMSLANIYLESKGSSVCQVTAIGVTVILLYTSRACYNLFILSFSQ 125
>AL122018-5|CAI22684.1| 399|Homo sapiens G protein-coupled receptor
137B protein.
Length = 399
Score = 29.9 bits (64), Expect = 9.6
Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Frame = +3
Query: 66 CFFSLTYCMYLLIQIKIASVYFEFYSSGLIDTFATLVSSMISET--LCFPLCI*TFDR 233
C SL+ C+Y + ++ +A++Y E S + A V+ ++ T C+ L I +F +
Sbjct: 205 CAVSLSICLYKISKMSLANIYLESKGSSVCQVTAIGVTVILLYTSRACYNLFILSFSQ 262
>AK223632-1|BAD97352.1| 399|Homo sapiens transmembrane 7
superfamily member 1 (upregulated in kidney) variant
protein.
Length = 399
Score = 29.9 bits (64), Expect = 9.6
Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Frame = +3
Query: 66 CFFSLTYCMYLLIQIKIASVYFEFYSSGLIDTFATLVSSMISET--LCFPLCI*TFDR 233
C SL+ C+Y + ++ +A++Y E S + A V+ ++ T C+ L I +F +
Sbjct: 205 CAVSLSICLYKISKMSLANIYLESKGSSVCQVTAIGVTVILLYTSRACYNLFILSFSQ 262
>AJ580807-1|CAE45342.1| 529|Homo sapiens mutated in bladder cancer
1 protein.
Length = 529
Score = 29.9 bits (64), Expect = 9.6
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = -3
Query: 574 ISKMSTKYHKNCTKDPNELEDPTRKQPDEQLTRKLKPLTTKPL 446
++K+ K N ++DP+ L PT+ E+ T+K+ P + PL
Sbjct: 470 LAKLKEKVENNVSRDPSRLYKPTKGW--EERTKKIGPTGSGPL 510
>AF169796-1|AAF80856.1| 484|Homo sapiens zinc finger DNA binding
protein protein.
Length = 484
Score = 29.9 bits (64), Expect = 9.6
Identities = 21/85 (24%), Positives = 32/85 (37%)
Frame = -3
Query: 571 SKMSTKYHKNCTKDPNELEDPTRKQPDEQLTRKLKPLTTKPLCDCSNCTCKDCPDVLKTF 392
SK S + + E PD ++ +PL+T L + C C +
Sbjct: 155 SKFSPQKEASPAAKTKETRSVEEIAPDPSEAKRPEPLSTSTLKQVTKVDCPVCGVNIPES 214
Query: 391 SINVTEDSCDFGTKKVEQIDESSHE 317
IN DSC +K E + S H+
Sbjct: 215 HINKHLDSCLSREEKKESLRSSVHK 239
>AF027826-1|AAC39669.1| 399|Homo sapiens putative seven pass
transmembrane protein protein.
Length = 399
Score = 29.9 bits (64), Expect = 9.6
Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Frame = +3
Query: 66 CFFSLTYCMYLLIQIKIASVYFEFYSSGLIDTFATLVSSMISET--LCFPLCI*TFDR 233
C SL+ C+Y + ++ +A++Y E S + A V+ ++ T C+ L I +F +
Sbjct: 205 CAVSLSICLYKISKMSLANIYLESKGSSVCQVTAIGVTVILLYTSRACYNLFILSFSQ 262
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,118,522
Number of Sequences: 237096
Number of extensions: 1744261
Number of successful extensions: 3763
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 3586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3759
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8511181328
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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