Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10a12
(723 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL034488-13|CAA22460.2| 345|Caenorhabditis elegans Hypothetical... 32 0.48
Z81587-3|CAB04700.1| 362|Caenorhabditis elegans Hypothetical pr... 31 0.83
AC006684-12|AAN60497.1| 528|Caenorhabditis elegans Hypothetical... 31 0.83
AC006684-11|AAF39968.1| 550|Caenorhabditis elegans Hypothetical... 31 0.83
Z69904-9|CAH60797.1| 2101|Caenorhabditis elegans Hypothetical pr... 30 1.9
Z69904-8|CAD57719.1| 2392|Caenorhabditis elegans Hypothetical pr... 30 1.9
Z69904-7|CAB54502.2| 2407|Caenorhabditis elegans Hypothetical pr... 30 1.9
Z69904-6|CAB54501.3| 2211|Caenorhabditis elegans Hypothetical pr... 30 1.9
Z66511-12|CAH60796.1| 2101|Caenorhabditis elegans Hypothetical p... 30 1.9
Z66511-11|CAD57694.1| 2392|Caenorhabditis elegans Hypothetical p... 30 1.9
Z66511-10|CAB54211.2| 2407|Caenorhabditis elegans Hypothetical p... 30 1.9
Z66511-9|CAB54210.3| 2211|Caenorhabditis elegans Hypothetical pr... 30 1.9
Z49912-1|CAA90140.1| 588|Caenorhabditis elegans Hypothetical pr... 30 1.9
Z70686-12|CAB54289.1| 2584|Caenorhabditis elegans Hypothetical p... 29 2.5
Z70686-11|CAA94615.1| 2606|Caenorhabditis elegans Hypothetical p... 29 2.5
Z70310-9|CAB54294.1| 2584|Caenorhabditis elegans Hypothetical pr... 29 2.5
Z70310-8|CAA94370.1| 2606|Caenorhabditis elegans Hypothetical pr... 29 2.5
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote... 29 2.5
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 29 2.5
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 29 2.5
U80952-5|AAB38092.1| 424|Caenorhabditis elegans Hypothetical pr... 29 3.4
Z81528-1|CAB04282.1| 345|Caenorhabditis elegans Hypothetical pr... 28 7.8
Z54306-2|CAA91088.1| 260|Caenorhabditis elegans Hypothetical pr... 28 7.8
>AL034488-13|CAA22460.2| 345|Caenorhabditis elegans Hypothetical
protein Y54G11A.12 protein.
Length = 345
Score = 31.9 bits (69), Expect = 0.48
Identities = 22/70 (31%), Positives = 32/70 (45%)
Frame = +1
Query: 160 RLLRWFHL*YQKLYVFPCVYKHLIVLLWQLFHMYSFGCYLTRLANFGSLLWTLHVSSRQF 339
++LR F + P V L L W + SF Y L N +L+TLH +S
Sbjct: 241 KMLRNFFISMCVQVTIPIVVLLLPNLYWNI--SISFDYYSQELNNISIILFTLHGTSSSI 298
Query: 340 AQLFLYQNRR 369
A +F+Y+ R
Sbjct: 299 AVIFIYKPYR 308
>Z81587-3|CAB04700.1| 362|Caenorhabditis elegans Hypothetical
protein T06G6.4 protein.
Length = 362
Score = 31.1 bits (67), Expect = 0.83
Identities = 23/99 (23%), Positives = 46/99 (46%), Gaps = 6/99 (6%)
Frame = -3
Query: 583 FLAISKMSTKYHKNCTKDPNELEDPTRKQPDEQLTRKLKPLTTKPLCDCSNCTCKDCPDV 404
+ + K S ++K K + E K+ ++LT K++ + D KD DV
Sbjct: 185 YFSYEKYSCVFNKKIAKQKEKGE---MKKQIQELTEKVEKKGAGNIEDQLQAKIKDLEDV 241
Query: 403 LKTFSINVTED------SCDFGTKKVEQIDESSHEVSIK 305
L+ ++N+T++ +CD ++ + + ES E +K
Sbjct: 242 LRQMTLNLTKEQAKSKATCDKLHRRSKTLGESREEARVK 280
>AC006684-12|AAN60497.1| 528|Caenorhabditis elegans Hypothetical
protein T02H6.1b protein.
Length = 528
Score = 31.1 bits (67), Expect = 0.83
Identities = 17/64 (26%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Frame = -3
Query: 331 ESSHEVSIKDCQSLLDVLNNTRNCTCEIIAKVVRSNVYIHRGKH--KVSDIIDETNVANV 158
E +HE + ++ + LLD + +T T E +A+ +R + G +V+D+++ + +
Sbjct: 76 EDAHERNYREAKKLLDKIQST-TTTQEEVAEKLRDDAVARTGTQVKRVADVVELEDDLEI 134
Query: 157 SIKP 146
S KP
Sbjct: 135 SYKP 138
>AC006684-11|AAF39968.1| 550|Caenorhabditis elegans Hypothetical
protein T02H6.1a protein.
Length = 550
Score = 31.1 bits (67), Expect = 0.83
Identities = 17/64 (26%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Frame = -3
Query: 331 ESSHEVSIKDCQSLLDVLNNTRNCTCEIIAKVVRSNVYIHRGKH--KVSDIIDETNVANV 158
E +HE + ++ + LLD + +T T E +A+ +R + G +V+D+++ + +
Sbjct: 76 EDAHERNYREAKKLLDKIQST-TTTQEEVAEKLRDDAVARTGTQVKRVADVVELEDDLEI 134
Query: 157 SIKP 146
S KP
Sbjct: 135 SYKP 138
>Z69904-9|CAH60797.1| 2101|Caenorhabditis elegans Hypothetical
protein F07A11.6e protein.
Length = 2101
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/71 (23%), Positives = 32/71 (45%)
Frame = -3
Query: 643 SYYTATKDVLNKQKLSFSYHFLAISKMSTKYHKNCTKDPNELEDPTRKQPDEQLTRKLKP 464
+Y + + LN Q S Y FL ++ ++ + + + + PD LTR L+
Sbjct: 281 AYQSRSFSPLNYQSQSPGYEFLESKEIKQEFSPTTSSASSSDLELDMEMPDNPLTRMLER 340
Query: 463 LTTKPLCDCSN 431
+ +P D S+
Sbjct: 341 MHWRPFIDVSS 351
>Z69904-8|CAD57719.1| 2392|Caenorhabditis elegans Hypothetical
protein F07A11.6c protein.
Length = 2392
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/71 (23%), Positives = 32/71 (45%)
Frame = -3
Query: 643 SYYTATKDVLNKQKLSFSYHFLAISKMSTKYHKNCTKDPNELEDPTRKQPDEQLTRKLKP 464
+Y + + LN Q S Y FL ++ ++ + + + + PD LTR L+
Sbjct: 572 AYQSRSFSPLNYQSQSPGYEFLESKEIKQEFSPTTSSASSSDLELDMEMPDNPLTRMLER 631
Query: 463 LTTKPLCDCSN 431
+ +P D S+
Sbjct: 632 MHWRPFIDVSS 642
>Z69904-7|CAB54502.2| 2407|Caenorhabditis elegans Hypothetical
protein F07A11.6b protein.
Length = 2407
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/71 (23%), Positives = 32/71 (45%)
Frame = -3
Query: 643 SYYTATKDVLNKQKLSFSYHFLAISKMSTKYHKNCTKDPNELEDPTRKQPDEQLTRKLKP 464
+Y + + LN Q S Y FL ++ ++ + + + + PD LTR L+
Sbjct: 587 AYQSRSFSPLNYQSQSPGYEFLESKEIKQEFSPTTSSASSSDLELDMEMPDNPLTRMLER 646
Query: 463 LTTKPLCDCSN 431
+ +P D S+
Sbjct: 647 MHWRPFIDVSS 657
>Z69904-6|CAB54501.3| 2211|Caenorhabditis elegans Hypothetical
protein F07A11.6a protein.
Length = 2211
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/71 (23%), Positives = 32/71 (45%)
Frame = -3
Query: 643 SYYTATKDVLNKQKLSFSYHFLAISKMSTKYHKNCTKDPNELEDPTRKQPDEQLTRKLKP 464
+Y + + LN Q S Y FL ++ ++ + + + + PD LTR L+
Sbjct: 587 AYQSRSFSPLNYQSQSPGYEFLESKEIKQEFSPTTSSASSSDLELDMEMPDNPLTRMLER 646
Query: 463 LTTKPLCDCSN 431
+ +P D S+
Sbjct: 647 MHWRPFIDVSS 657
>Z66511-12|CAH60796.1| 2101|Caenorhabditis elegans Hypothetical
protein F07A11.6e protein.
Length = 2101
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/71 (23%), Positives = 32/71 (45%)
Frame = -3
Query: 643 SYYTATKDVLNKQKLSFSYHFLAISKMSTKYHKNCTKDPNELEDPTRKQPDEQLTRKLKP 464
+Y + + LN Q S Y FL ++ ++ + + + + PD LTR L+
Sbjct: 281 AYQSRSFSPLNYQSQSPGYEFLESKEIKQEFSPTTSSASSSDLELDMEMPDNPLTRMLER 340
Query: 463 LTTKPLCDCSN 431
+ +P D S+
Sbjct: 341 MHWRPFIDVSS 351
>Z66511-11|CAD57694.1| 2392|Caenorhabditis elegans Hypothetical
protein F07A11.6c protein.
Length = 2392
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/71 (23%), Positives = 32/71 (45%)
Frame = -3
Query: 643 SYYTATKDVLNKQKLSFSYHFLAISKMSTKYHKNCTKDPNELEDPTRKQPDEQLTRKLKP 464
+Y + + LN Q S Y FL ++ ++ + + + + PD LTR L+
Sbjct: 572 AYQSRSFSPLNYQSQSPGYEFLESKEIKQEFSPTTSSASSSDLELDMEMPDNPLTRMLER 631
Query: 463 LTTKPLCDCSN 431
+ +P D S+
Sbjct: 632 MHWRPFIDVSS 642
>Z66511-10|CAB54211.2| 2407|Caenorhabditis elegans Hypothetical
protein F07A11.6b protein.
Length = 2407
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/71 (23%), Positives = 32/71 (45%)
Frame = -3
Query: 643 SYYTATKDVLNKQKLSFSYHFLAISKMSTKYHKNCTKDPNELEDPTRKQPDEQLTRKLKP 464
+Y + + LN Q S Y FL ++ ++ + + + + PD LTR L+
Sbjct: 587 AYQSRSFSPLNYQSQSPGYEFLESKEIKQEFSPTTSSASSSDLELDMEMPDNPLTRMLER 646
Query: 463 LTTKPLCDCSN 431
+ +P D S+
Sbjct: 647 MHWRPFIDVSS 657
>Z66511-9|CAB54210.3| 2211|Caenorhabditis elegans Hypothetical
protein F07A11.6a protein.
Length = 2211
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/71 (23%), Positives = 32/71 (45%)
Frame = -3
Query: 643 SYYTATKDVLNKQKLSFSYHFLAISKMSTKYHKNCTKDPNELEDPTRKQPDEQLTRKLKP 464
+Y + + LN Q S Y FL ++ ++ + + + + PD LTR L+
Sbjct: 587 AYQSRSFSPLNYQSQSPGYEFLESKEIKQEFSPTTSSASSSDLELDMEMPDNPLTRMLER 646
Query: 463 LTTKPLCDCSN 431
+ +P D S+
Sbjct: 647 MHWRPFIDVSS 657
>Z49912-1|CAA90140.1| 588|Caenorhabditis elegans Hypothetical
protein T24F1.2 protein.
Length = 588
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -3
Query: 706 KLGDDKKMI*YQQQCIYIAKHSYYTATKDVLNKQKLSFSYHF 581
KL +DKK Y + Y KH+ + ++V+N QK S + F
Sbjct: 164 KLEEDKKKYSYLLKVKYKLKHAIGSTLREVMNNQKRSRRFFF 205
>Z70686-12|CAB54289.1| 2584|Caenorhabditis elegans Hypothetical
protein R11A8.7b protein.
Length = 2584
Score = 29.5 bits (63), Expect = 2.5
Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 9/67 (13%)
Frame = -3
Query: 409 DVLKTFSINVTEDSCD-FGTKKVE---QIDESSHEVSIKDCQ-----SLLDVLNNTRNCT 257
D L T +I + +D C+ F TK + +I H +S C+ +LLD++ + +
Sbjct: 27 DCLHTIAIEIEDDDCEHFPTKAISTVLKILNFEHFLSSDKCRFPPVSNLLDIIESRQMDD 86
Query: 256 CEIIAKV 236
C+I+ K+
Sbjct: 87 CQILFKI 93
>Z70686-11|CAA94615.1| 2606|Caenorhabditis elegans Hypothetical
protein R11A8.7a protein.
Length = 2606
Score = 29.5 bits (63), Expect = 2.5
Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 9/67 (13%)
Frame = -3
Query: 409 DVLKTFSINVTEDSCD-FGTKKVE---QIDESSHEVSIKDCQ-----SLLDVLNNTRNCT 257
D L T +I + +D C+ F TK + +I H +S C+ +LLD++ + +
Sbjct: 27 DCLHTIAIEIEDDDCEHFPTKAISTVLKILNFEHFLSSDKCRFPPVSNLLDIIESRQMDD 86
Query: 256 CEIIAKV 236
C+I+ K+
Sbjct: 87 CQILFKI 93
>Z70310-9|CAB54294.1| 2584|Caenorhabditis elegans Hypothetical
protein R11A8.7b protein.
Length = 2584
Score = 29.5 bits (63), Expect = 2.5
Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 9/67 (13%)
Frame = -3
Query: 409 DVLKTFSINVTEDSCD-FGTKKVE---QIDESSHEVSIKDCQ-----SLLDVLNNTRNCT 257
D L T +I + +D C+ F TK + +I H +S C+ +LLD++ + +
Sbjct: 27 DCLHTIAIEIEDDDCEHFPTKAISTVLKILNFEHFLSSDKCRFPPVSNLLDIIESRQMDD 86
Query: 256 CEIIAKV 236
C+I+ K+
Sbjct: 87 CQILFKI 93
>Z70310-8|CAA94370.1| 2606|Caenorhabditis elegans Hypothetical
protein R11A8.7a protein.
Length = 2606
Score = 29.5 bits (63), Expect = 2.5
Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 9/67 (13%)
Frame = -3
Query: 409 DVLKTFSINVTEDSCD-FGTKKVE---QIDESSHEVSIKDCQ-----SLLDVLNNTRNCT 257
D L T +I + +D C+ F TK + +I H +S C+ +LLD++ + +
Sbjct: 27 DCLHTIAIEIEDDDCEHFPTKAISTVLKILNFEHFLSSDKCRFPPVSNLLDIIESRQMDD 86
Query: 256 CEIIAKV 236
C+I+ K+
Sbjct: 87 CQILFKI 93
>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
protein.
Length = 10578
Score = 29.5 bits (63), Expect = 2.5
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
Frame = -3
Query: 334 DESSHEVSIKDCQSLLDVL---NNTRNCTCEI--IAKVVRSNVYIHRGKHKVSDII 182
D+SSH++++ C S L + TR TCE+ + V ++ + R + VSD +
Sbjct: 4370 DDSSHKITVDKCISTLQLKLEETGTRIITCEVSNSSSKVNASCNVERVHNTVSDFV 4425
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 29.5 bits (63), Expect = 2.5
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
Frame = -3
Query: 334 DESSHEVSIKDCQSLLDVL---NNTRNCTCEI--IAKVVRSNVYIHRGKHKVSDII 182
D+SSH++++ C S L + TR TCE+ + V ++ + R + VSD +
Sbjct: 4370 DDSSHKITVDKCISTLQLKLEETGTRIITCEVSNSSSKVNASCNVERVHNTVSDFV 4425
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 29.5 bits (63), Expect = 2.5
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
Frame = -3
Query: 334 DESSHEVSIKDCQSLLDVL---NNTRNCTCEI--IAKVVRSNVYIHRGKHKVSDII 182
D+SSH++++ C S L + TR TCE+ + V ++ + R + VSD +
Sbjct: 4370 DDSSHKITVDKCISTLQLKLEETGTRIITCEVSNSSSKVNASCNVERVHNTVSDFV 4425
>U80952-5|AAB38092.1| 424|Caenorhabditis elegans Hypothetical
protein F54H5.2 protein.
Length = 424
Score = 29.1 bits (62), Expect = 3.4
Identities = 16/56 (28%), Positives = 27/56 (48%)
Frame = -3
Query: 646 HSYYTATKDVLNKQKLSFSYHFLAISKMSTKYHKNCTKDPNELEDPTRKQPDEQLT 479
H + +++K K S++ F +ST K+ TK PN+L T K+ + T
Sbjct: 291 HKIFMLLISIMSKGKFSWNDPFDWEMPISTPPSKSITKSPNQLSKETIKKASREKT 346
>Z81528-1|CAB04282.1| 345|Caenorhabditis elegans Hypothetical
protein F35E2.1 protein.
Length = 345
Score = 27.9 bits (59), Expect = 7.8
Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 2/77 (2%)
Frame = +2
Query: 467 LQFS-G*LFIGLFSGWIFEFIWVF-RAIFMVFCRHFRNG*KVI*KTKLLFIQDIFSSSVV 640
L+FS G + +FS F F + + + F +HF N K I + Q + SV+
Sbjct: 190 LRFSNGMELVRIFSTLFFNFAAIIVNFVILRFVKHFENENKNIQSKIIQLTQSLLIQSVI 249
Query: 641 GMFSDVNTLLLVLNHFF 691
+ + LLL +F
Sbjct: 250 PVIVSLPLLLLSFEFYF 266
>Z54306-2|CAA91088.1| 260|Caenorhabditis elegans Hypothetical
protein B0457.4 protein.
Length = 260
Score = 27.9 bits (59), Expect = 7.8
Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
Frame = -3
Query: 529 PNELEDPTRKQPDEQLTRKLKPLTTKPLCDCSNCTCKDCPDVLKTFSINVTEDS-CDFGT 353
P + E P P +Q + +T + C C TC++C K I E S C F
Sbjct: 43 PKKTEHPQLSFPMDQRWAESTVVTNETHCLCEILTCRNCNKSHKRSRIEHVEVSQCRFSW 102
Query: 352 KKV 344
KV
Sbjct: 103 FKV 105
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,260,431
Number of Sequences: 27780
Number of extensions: 321107
Number of successful extensions: 987
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 928
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 987
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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