Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10a09
         (270 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF181636-1|AAD55422.1|  682|Drosophila melanogaster BcDNA.GH0726...    26   6.3  
AE014134-2078|AAS64682.1|  682|Drosophila melanogaster CG31705-P...    26   6.3  
AE014134-2077|AAS64681.1|  682|Drosophila melanogaster CG31705-P...    26   6.3  
AE014134-2076|AAF53106.2|  682|Drosophila melanogaster CG31705-P...    26   6.3  

>AF181636-1|AAD55422.1|  682|Drosophila melanogaster BcDNA.GH07269
           protein.
          Length = 682

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +1

Query: 61  ARCKW*CTESRGRSMGRSKNRRVLHTYS 144
           A  KW  T SR R+   S  R   H+YS
Sbjct: 27  AHAKWKSTGSRSRTSSSSNRRTSSHSYS 54


>AE014134-2078|AAS64682.1|  682|Drosophila melanogaster CG31705-PC,
           isoform C protein.
          Length = 682

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +1

Query: 61  ARCKW*CTESRGRSMGRSKNRRVLHTYS 144
           A  KW  T SR R+   S  R   H+YS
Sbjct: 27  AHAKWKSTGSRSRTSSSSNRRTSSHSYS 54


>AE014134-2077|AAS64681.1|  682|Drosophila melanogaster CG31705-PB,
           isoform B protein.
          Length = 682

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +1

Query: 61  ARCKW*CTESRGRSMGRSKNRRVLHTYS 144
           A  KW  T SR R+   S  R   H+YS
Sbjct: 27  AHAKWKSTGSRSRTSSSSNRRTSSHSYS 54


>AE014134-2076|AAF53106.2|  682|Drosophila melanogaster CG31705-PA,
           isoform A protein.
          Length = 682

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +1

Query: 61  ARCKW*CTESRGRSMGRSKNRRVLHTYS 144
           A  KW  T SR R+   S  R   H+YS
Sbjct: 27  AHAKWKSTGSRSRTSSSSNRRTSSHSYS 54


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,781,976
Number of Sequences: 53049
Number of extensions: 89971
Number of successful extensions: 228
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 227
length of database: 24,988,368
effective HSP length: 68
effective length of database: 21,381,036
effective search space used: 449001756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)