Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10a09
         (270 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    20   6.2  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    19   8.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    19   8.2  

>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
           receptor 2 protein.
          Length = 210

 Score = 19.8 bits (39), Expect = 6.2
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 162 RLIFKSIKVFTSAFL*NWYE 221
           RLI +S  V  +A+  +WY+
Sbjct: 179 RLIEESSSVMEAAYSCHWYD 198


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 19.4 bits (38), Expect = 8.2
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -3

Query: 70  YXVLHEDMLNSENISXAGVVD 8
           Y  +H D+++  NIS   V D
Sbjct: 473 YVTVHGDVISHVNISHVMVED 493


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 19.4 bits (38), Expect = 8.2
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -3

Query: 70  YXVLHEDMLNSENISXAGVVD 8
           Y  +H D+++  NIS   V D
Sbjct: 473 YVTVHGDVISHVNISHVMVED 493


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 50,060
Number of Sequences: 438
Number of extensions: 566
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 48
effective length of database: 125,319
effective search space used:  5138079
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)