Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10a06
         (845 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    24   1.3  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    23   4.0  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    23   4.0  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    23   4.0  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    23   4.0  
AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory recept...    23   4.0  
AM292335-1|CAL23147.2|  374|Tribolium castaneum gustatory recept...    23   4.0  
AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory recept...    22   7.0  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -1

Query: 608 CKEYYTSNRIIDCLIQILFTYTLFYLVKIFY 516
           C  Y+    ++ C   I+FT  L +L+ I+Y
Sbjct: 257 CIYYFYYMHLLFCCAFIIFTMHLLFLLCIYY 287


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 8/27 (29%), Positives = 13/27 (48%)
 Frame = -2

Query: 220  SSFVFKYSTSIFFTFICYCCMFRKQFI 140
            +SF +     +FF  +C+ C    Q I
Sbjct: 945  TSFYYNIIPILFFMLVCFTCKSNIQLI 971


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 8/27 (29%), Positives = 13/27 (48%)
 Frame = -2

Query: 220  SSFVFKYSTSIFFTFICYCCMFRKQFI 140
            +SF +     +FF  +C+ C    Q I
Sbjct: 945  TSFYYNIIPILFFMLVCFTCKSNIQLI 971


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 8/27 (29%), Positives = 13/27 (48%)
 Frame = -2

Query: 220  SSFVFKYSTSIFFTFICYCCMFRKQFI 140
            +SF +     +FF  +C+ C    Q I
Sbjct: 945  TSFYYNIIPILFFMLVCFTCKSNIQLI 971


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 8/27 (29%), Positives = 13/27 (48%)
 Frame = -2

Query: 220  SSFVFKYSTSIFFTFICYCCMFRKQFI 140
            +SF +     +FF  +C+ C    Q I
Sbjct: 945  TSFYYNIIPILFFMLVCFTCKSNIQLI 971


>AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory receptor
           candidate 49 protein.
          Length = 418

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -1

Query: 575 DCLIQILFTYTLFYLVKIFY 516
           D L+ +++T+ LFYL   FY
Sbjct: 311 DTLV-VIYTFNLFYLCFCFY 329


>AM292335-1|CAL23147.2|  374|Tribolium castaneum gustatory receptor
           candidate 14 protein.
          Length = 374

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -1

Query: 575 DCLIQILFTYTLFYLVKIFY 516
           D L+ +++T+ LFYL   FY
Sbjct: 267 DTLV-VIYTFNLFYLCFCFY 285


>AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory receptor
           candidate 36 protein.
          Length = 355

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = +1

Query: 277 IMDVCYDYPNRVIQDRRQTDAQQKIAQREYAFRFQTT 387
           ++ VCY+Y +R   + ++     ++AQ+  A   Q T
Sbjct: 288 LVGVCYEYQDRFSDESKKRRELLRLAQQVNANIAQIT 324


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,584
Number of Sequences: 336
Number of extensions: 3694
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23348025
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)