Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10a06
         (845 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC977.06 |||S. pombe specific DUF999 family protein 3|Schizosa...    30   0.36 
SPBPB2B2.07c |||S. pombe specific DUF999 protein family 7|Schizo...    30   0.36 
SPBC1348.07 |||S. pombe specific DUF999 protein family 6|Schizos...    30   0.36 
SPBPB2B2.14c |||S. pombe specific DUF999 protein family 8|Schizo...    30   0.47 

>SPAC977.06 |||S. pombe specific DUF999 family protein
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 189

 Score = 30.3 bits (65), Expect = 0.36
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
 Frame = +3

Query: 138 KINCFRNI---QQ*QINVKKIEVEYLNTNELNAFSKEYSYCFGDG 263
           K N F NI   Q+ +IN+K  ++++   N    FSK +  C+ DG
Sbjct: 24  KQNLFTNIIKPQKDKINIKTDKIKFFLNNLFTEFSKFHDSCYPDG 68


>SPBPB2B2.07c |||S. pombe specific DUF999 protein family
           7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 165

 Score = 30.3 bits (65), Expect = 0.36
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
 Frame = +3

Query: 138 KINCFRNI---QQ*QINVKKIEVEYLNTNELNAFSKEYSYCFGDG 263
           K N F NI   Q+ +IN+K  ++++   N    FSK +  C+ DG
Sbjct: 44  KQNLFTNIIKPQKDKINIKTDKIKFFLNNLFTEFSKFHDSCYPDG 88


>SPBC1348.07 |||S. pombe specific DUF999 protein family
           6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 230

 Score = 30.3 bits (65), Expect = 0.36
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
 Frame = +3

Query: 138 KINCFRNI---QQ*QINVKKIEVEYLNTNELNAFSKEYSYCFGDG 263
           K N F NI   Q+ +IN+K  ++++   N    FSK +  C+ DG
Sbjct: 24  KQNLFTNIVKPQKDKINIKTDKIKFFLNNLFTEFSKFHDSCYPDG 68


>SPBPB2B2.14c |||S. pombe specific DUF999 protein family
           8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 230

 Score = 29.9 bits (64), Expect = 0.47
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
 Frame = +3

Query: 138 KINCFRNI---QQ*QINVKKIEVEYLNTNELNAFSKEYSYCFGDG 263
           K N F NI   Q+ +IN+K  ++++   N    FSK +  C+ DG
Sbjct: 24  KQNLFTNIIKPQKDKINIKTDKIKFFLDNLFTEFSKFHDSCYPDG 68


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,077,815
Number of Sequences: 5004
Number of extensions: 62221
Number of successful extensions: 166
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)