Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10a06
         (845 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF078788-4|AAC26961.1|  342|Caenorhabditis elegans Hypothetical ...    31   0.78 
U64836-8|AAG24063.1|  339|Caenorhabditis elegans Serpentine rece...    29   4.2  
Z99286-2|CAH60793.1|  310|Caenorhabditis elegans Hypothetical pr...    28   9.6  
Z82272-6|CAB05222.1| 1431|Caenorhabditis elegans Hypothetical pr...    28   9.6  
Z82059-9|CAB04875.1|  292|Caenorhabditis elegans Hypothetical pr...    28   9.6  
AF129111-1|AAD37121.1|  292|Caenorhabditis elegans cell division...    28   9.6  
AF125442-4|AAD12794.1|  317|Caenorhabditis elegans Serpentine re...    28   9.6  

>AF078788-4|AAC26961.1|  342|Caenorhabditis elegans Hypothetical
           protein ZC190.2 protein.
          Length = 342

 Score = 31.5 bits (68), Expect = 0.78
 Identities = 13/41 (31%), Positives = 25/41 (60%)
 Frame = -1

Query: 635 ISEMSDPFACKEYYTSNRIIDCLIQILFTYTLFYLVKIFYD 513
           IS ++  F   +++++  I+ C+I +L  +   YLV+I YD
Sbjct: 123 ISTLNPKFRKSKFFSAVFIVGCIIGMLSAFLYIYLVRISYD 163


>U64836-8|AAG24063.1|  339|Caenorhabditis elegans Serpentine
           receptor, class h protein187 protein.
          Length = 339

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -2

Query: 268 LFPSPKQYEYSFEKALSSFVFKYSTSIFFTFICYCCM 158
           +F   + Y Y F      F+F  +++  FTF+C+ CM
Sbjct: 187 MFVLAEDYTYHFWACF--FIFSTTSTEVFTFVCFICM 221


>Z99286-2|CAH60793.1|  310|Caenorhabditis elegans Hypothetical
           protein Y7A9C.8 protein.
          Length = 310

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -1

Query: 626 MSDPFACKEYYTSNRIIDCLIQILFTYTLFYLVKIFYDIISTNL 495
           MS+  A  +Y  S   +     I   +TLFYL+   + ++S NL
Sbjct: 1   MSNSSAFIDYIISEPTVGGFFAIFLIFTLFYLITFPFYVLSFNL 44


>Z82272-6|CAB05222.1| 1431|Caenorhabditis elegans Hypothetical protein
            F55G11.9 protein.
          Length = 1431

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
 Frame = -1

Query: 629  EMSDPFACKEYYTSNRIIDCLIQILFTYTLFYLVKIFYDIIS-TNLPNSNN*LI 471
            E SD F  K     N +  C+I I+F   L Y V + Y   S  N P   + L+
Sbjct: 930  EESDVFNKKPEILMNLLASCIIVIIFYSFLLYFVSLVYLTASLINTPTKGSLLL 983


>Z82059-9|CAB04875.1|  292|Caenorhabditis elegans Hypothetical
           protein T27E9.3 protein.
          Length = 292

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -2

Query: 640 LRSLKCRTRLRVRSIIHRIELLTV*FRYCSR 548
           LR LK R  +R+  ++H    LT+ F YC +
Sbjct: 55  LRELKHRNVVRLYDVVHSENKLTLVFEYCDQ 85


>AF129111-1|AAD37121.1|  292|Caenorhabditis elegans cell division
           protein kinase 5 protein.
          Length = 292

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -2

Query: 640 LRSLKCRTRLRVRSIIHRIELLTV*FRYCSR 548
           LR LK R  +R+  ++H    LT+ F YC +
Sbjct: 55  LRELKHRNVVRLYDVVHSENKLTLVFEYCDQ 85


>AF125442-4|AAD12794.1|  317|Caenorhabditis elegans Serpentine
           receptor, class v protein21 protein.
          Length = 317

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +1

Query: 268 ACIIMDVCYDYPNRVIQDRRQTDAQQKIAQREYAFRFQTTIPF 396
           +C+I  +CY +  ++++ + QT A   I QRE    FQ  + F
Sbjct: 199 SCLICLICYGFILKIVRSKSQT-ASVSI-QREVRLAFQVLLSF 239


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,539,843
Number of Sequences: 27780
Number of extensions: 331220
Number of successful extensions: 883
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 856
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 881
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2098003600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)