Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10a04
         (820 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic pr...    24   1.7  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    23   2.9  
AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory recept...    23   2.9  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    22   6.7  
AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain tran...    22   6.7  
AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.          22   6.7  

>U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic
           protein protein.
          Length = 372

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -3

Query: 500 YTHPHRYRHKMSHKSLSR 447
           + HPHR+R K +  S+ R
Sbjct: 99  FVHPHRFRLKFNISSIPR 116


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +3

Query: 123 TYFVLVFSLFQLKTVILTT*VRP 191
           T+F   FSL+ LK+      VRP
Sbjct: 310 THFYCAFSLYPLKSTFYLNVVRP 332


>AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory receptor
           candidate 16 protein.
          Length = 452

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +1

Query: 286 SIHLLIWIFSVFLL 327
           S+HLL+WI   F+L
Sbjct: 252 SLHLLLWITVTFIL 265


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 9/22 (40%), Positives = 10/22 (45%)
 Frame = +2

Query: 131 CSCIFSFSA*NCNINYVSKTRT 196
           C+C   FS  NC  N    T T
Sbjct: 9   CTCPLGFSGINCQTNDEDCTET 30


>AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain
           transcription factor Zen2 protein.
          Length = 243

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +2

Query: 404 QFFN*QFPGFLPIIVLTTTC 463
           QF   QFPG   ++V   TC
Sbjct: 177 QFLYNQFPGSSQVVVKDETC 196


>AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.
          Length = 292

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +2

Query: 404 QFFN*QFPGFLPIIVLTTTC 463
           QF   QFPG   ++V   TC
Sbjct: 197 QFLYNQFPGSSQVVVKDETC 216


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,058
Number of Sequences: 336
Number of extensions: 4407
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22414104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)