Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10a04
(820 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0607 + 25437897-25438046,25438180-25438236,25438522-254386... 49 4e-06
07_03_0802 - 21614891-21615195,21615637-21615823,21615939-216161... 48 7e-06
03_02_0737 + 10820728-10821096,10821320-10821532,10821631-108217... 47 2e-05
05_03_0270 - 11337212-11337418,11337448-11337606,11337696-113377... 40 0.003
01_06_1599 - 38539460-38539480,38539973-38540054,38540185-385402... 39 0.005
07_01_0239 + 1744353-1746365 30 2.5
10_08_0804 + 20700414-20700723,20700813-20700924,20701380-207014... 29 4.4
09_06_0349 + 22457820-22457987,22458202-22458246,22458597-224586... 29 4.4
06_03_1330 - 29375494-29376912 29 4.4
06_01_0325 - 2366193-2366367,2367063-2367122,2367323-2367463,236... 29 5.9
02_04_0266 - 21415912-21418563 29 5.9
01_06_0256 - 27923497-27923855,27923944-27924016,27924116-27924121 29 5.9
02_04_0103 - 19768288-19768737 28 7.8
>11_06_0607 +
25437897-25438046,25438180-25438236,25438522-25438602,
25438720-25438777,25438888-25438991,25439064-25439115,
25439232-25439281,25440279-25440443,25440531-25440603,
25440714-25440846,25441146-25441203,25441411-25441458,
25441593-25441676,25441803-25441868,25442419-25442502
Length = 420
Score = 49.2 bits (112), Expect = 4e-06
Identities = 32/80 (40%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Frame = -1
Query: 589 INECELSEKFVRGSGPGGSAVNKNSNCVVLTHIPTGTVIKCHTSRCQDDNRKKARELLIE 410
I+ ++ K R G GG VNK V L H PTG I C R Q NR++A +LL
Sbjct: 247 IDPKDIELKTARSGGAGGQNVNKVETAVDLIHKPTGIRIFCTEERSQLQNRERAFQLLRA 306
Query: 409 KLDD--MINGPESVSAQRKL 356
KL + + ES+ QRKL
Sbjct: 307 KLYEIKLREQQESIRNQRKL 326
>07_03_0802 -
21614891-21615195,21615637-21615823,21615939-21616154,
21616669-21616872,21617336-21617569,21617670-21617763,
21618844-21618890,21619293-21619309,21620183-21620459
Length = 526
Score = 48.4 bits (110), Expect = 7e-06
Identities = 26/63 (41%), Positives = 32/63 (50%)
Frame = -1
Query: 592 KINECELSEKFVRGSGPGGSAVNKNSNCVVLTHIPTGTVIKCHTSRCQDDNRKKARELLI 413
+I E +L F R G GG VNK V + HIPTG ++C R Q N+ KA L
Sbjct: 383 EIPEEDLEISFTRAGGKGGQNVNKVETAVRMVHIPTGIAVRCTEERSQLANKIKALSRLK 442
Query: 412 EKL 404
KL
Sbjct: 443 AKL 445
>03_02_0737 +
10820728-10821096,10821320-10821532,10821631-10821732,
10821755-10821793,10821830-10821967,10822182-10822486,
10822784-10822937,10823279-10823404
Length = 481
Score = 46.8 bits (106), Expect = 2e-05
Identities = 22/66 (33%), Positives = 32/66 (48%)
Frame = -1
Query: 592 KINECELSEKFVRGSGPGGSAVNKNSNCVVLTHIPTGTVIKCHTSRCQDDNRKKARELLI 413
+I + +L + R GPGG N + V + HIPTG C R Q N+ A +L
Sbjct: 344 QIKDSDLRIERFRSGGPGGQHANCTESAVRIVHIPTGITATCQNERSQHMNKASAMAVLQ 403
Query: 412 EKLDDM 395
+LD +
Sbjct: 404 SRLDQL 409
>05_03_0270 -
11337212-11337418,11337448-11337606,11337696-11337770,
11337926-11338004,11338096-11338144,11338243-11338426,
11338511-11338609,11338742-11338840
Length = 316
Score = 39.5 bits (88), Expect = 0.003
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = -1
Query: 556 RGSGPGGSAVNKNSNCVVLTHIPTGTVIKCHTSRCQ 449
R G GG +VN + V +TH+PTGTV+ R Q
Sbjct: 264 RSGGSGGQSVNTTDSAVRITHVPTGTVVAIQDERSQ 299
>01_06_1599 -
38539460-38539480,38539973-38540054,38540185-38540255,
38540359-38540489,38550539-38550614,38551229-38551588
Length = 246
Score = 38.7 bits (86), Expect = 0.005
Identities = 20/54 (37%), Positives = 27/54 (50%)
Frame = -1
Query: 589 INECELSEKFVRGSGPGGSAVNKNSNCVVLTHIPTGTVIKCHTSRCQDDNRKKA 428
+ +CE+ + SGPGG NK + V L H PTG + + R Q NR A
Sbjct: 83 MGQCEMGT--FKASGPGGQHRNKRESAVRLRHRPTGIIAQAVEDRSQHMNRASA 134
>07_01_0239 + 1744353-1746365
Length = 670
Score = 29.9 bits (64), Expect = 2.5
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -1
Query: 616 TIDYSKVPKINECELSEKFVRGSGPGGS 533
++ YSK+PKIN +L + G+G G S
Sbjct: 256 SLQYSKLPKINTSDLPDHVTYGTGRGSS 283
>10_08_0804 +
20700414-20700723,20700813-20700924,20701380-20701467,
20702530-20702910
Length = 296
Score = 29.1 bits (62), Expect = 4.4
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Frame = -1
Query: 694 QLCDMFLLTSKYFRNFSPRLAAAFKHTIDYSKVPKINECELSEKFVR-GSGPGGSAVNKN 518
QL F++ + F NF+ LA + ++I+Y + EL R G+GPG +
Sbjct: 138 QLTGFFIINTYMFLNFATSLAVYYPYSINYES----HAIELPSSQERAGAGPGRRPDLVS 193
Query: 517 SNCVV 503
+N VV
Sbjct: 194 TNAVV 198
>09_06_0349 +
22457820-22457987,22458202-22458246,22458597-22458650,
22458742-22458846,22458932-22459138,22459217-22459302,
22459423-22460330,22460566-22460624
Length = 543
Score = 29.1 bits (62), Expect = 4.4
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = -1
Query: 436 KKARELLIEKLDDMINGPESVSA-QRKLIEEKKYKRNATKKQKISKLKDE 290
K A L +KL ++ E+ Q +LIE K+ K+ K+Q++ LKDE
Sbjct: 201 KAAEALRCQKL--LVEEEEAAQKRQAELIERKRMKKLRQKEQRLKDLKDE 248
>06_03_1330 - 29375494-29376912
Length = 472
Score = 29.1 bits (62), Expect = 4.4
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = -1
Query: 712 PCCREGQLCDMFLLTSKYFRNFSP 641
PCC G+ C M + SKY SP
Sbjct: 306 PCCCSGRACSMSIPCSKYLVELSP 329
>06_01_0325 -
2366193-2366367,2367063-2367122,2367323-2367463,
2368175-2368288,2368444-2368475,2368736-2368793,
2369263-2369434,2369584-2370334,2370743-2371036
Length = 598
Score = 28.7 bits (61), Expect = 5.9
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = -1
Query: 382 ESVSAQRKLIEEKKYKRNATKKQKISKLKDEWKKR 278
E++SA RK + K Y + T+K+K+ + + E KKR
Sbjct: 540 ETLSAMRKNVLAKCYGGDITRKKKLLEKQKEGKKR 574
>02_04_0266 - 21415912-21418563
Length = 883
Score = 28.7 bits (61), Expect = 5.9
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = -1
Query: 487 TGTVIKCHTSRCQDDNRK-KARELLIEKLDDMINGPESVSAQRKLIEEKKY 338
TG +KCH +RC+D RK +L + ++ P + S + L +Y
Sbjct: 796 TGGHLKCHITRCEDVPRKFSPWKLSMAPCENFATPPSASSGKNLLSSRHQY 846
>01_06_0256 - 27923497-27923855,27923944-27924016,27924116-27924121
Length = 145
Score = 28.7 bits (61), Expect = 5.9
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = -1
Query: 379 SVSAQRKLIEEKKYKRNATKKQKISKLKDEWKKRE 275
+VS ++K EEKK K KK+K + ++E KK++
Sbjct: 74 AVSDEKKEAEEKKKKDEEEKKKKEKEKEEEEKKKK 108
>02_04_0103 - 19768288-19768737
Length = 149
Score = 28.3 bits (60), Expect = 7.8
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = -1
Query: 394 INGPESVSAQRKLIEEKKYKRNATKKQKISKLKDEWKKRE 275
I+GP +RK ++K K+ KK+K K K + KK++
Sbjct: 96 IDGPMREKRRRKRKRKRKKKKKKKKKKKKKKKKKKKKKKK 135
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,608,867
Number of Sequences: 37544
Number of extensions: 421228
Number of successful extensions: 940
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 937
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2244686244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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