Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10a04
         (820 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE013599-2244|AAM68513.1|  146|Drosophila melanogaster CG30100-P...   130   3e-30
AY061245-1|AAL28793.1|  392|Drosophila melanogaster LD18447p pro...    46   8e-05
AE014134-2302|AAF53262.1|  392|Drosophila melanogaster CG5705-PA...    46   8e-05
BT024311-1|ABC86373.1|  162|Drosophila melanogaster IP11653p pro...    30   3.3  
BT012301-1|AAS77426.1|  346|Drosophila melanogaster LP23408p pro...    29   5.8  
AE014297-4252|AAF56805.2|  346|Drosophila melanogaster CG14062-P...    29   5.8  
AE014296-1334|AAN12027.1|  570|Drosophila melanogaster CG17888-P...    29   7.6  

>AE013599-2244|AAM68513.1|  146|Drosophila melanogaster CG30100-PA
           protein.
          Length = 146

 Score =  130 bits (313), Expect = 3e-30
 Identities = 57/123 (46%), Positives = 80/123 (65%)
 Frame = -1

Query: 643 PRLAAAFKHTIDYSKVPKINECELSEKFVRGSGPGGSAVNKNSNCVVLTHIPTGTVIKCH 464
           P  A   K  +DYS+ P + E ++ E F+RGSGPGG AVNK SNCV L H+PT   +KCH
Sbjct: 12  PPTAVRCKSNLDYSRFPVLQESDIEETFMRGSGPGGQAVNKTSNCVFLRHLPTNITVKCH 71

Query: 463 TSRCQDDNRKKARELLIEKLDDMINGPESVSAQRKLIEEKKYKRNATKKQKISKLKDEWK 284
           T R    NR +AR+LL+EKLD  +NG  S++AQ K  E++K      +++K+ ++K  W+
Sbjct: 72  THRLASKNRVEARKLLLEKLDVHLNGEHSIAAQVKAQEQRKSTERRRRQEKLQEMKKSWQ 131

Query: 283 KRE 275
            RE
Sbjct: 132 DRE 134


>AY061245-1|AAL28793.1|  392|Drosophila melanogaster LD18447p
           protein.
          Length = 392

 Score = 45.6 bits (103), Expect = 8e-05
 Identities = 30/94 (31%), Positives = 48/94 (51%)
 Frame = -1

Query: 589 INECELSEKFVRGSGPGGSAVNKNSNCVVLTHIPTGTVIKCHTSRCQDDNRKKARELLIE 410
           I E +L  +  R SG GG  VN   + V + H+PTG  ++  + R Q  NR+ A + L  
Sbjct: 236 IAEKDLKIETKRASGAGGQHVNTTDSAVRIVHLPTGLAVEAQSERSQLKNRELAMKRLRS 295

Query: 409 KLDDMINGPESVSAQRKLIEEKKYKRNATKKQKI 308
           +L  +    ESV A  K+  +K  + +  + +KI
Sbjct: 296 RL--VQQQLESVEAS-KMATKKAQQGSLNRNEKI 326


>AE014134-2302|AAF53262.1|  392|Drosophila melanogaster CG5705-PA
           protein.
          Length = 392

 Score = 45.6 bits (103), Expect = 8e-05
 Identities = 30/94 (31%), Positives = 48/94 (51%)
 Frame = -1

Query: 589 INECELSEKFVRGSGPGGSAVNKNSNCVVLTHIPTGTVIKCHTSRCQDDNRKKARELLIE 410
           I E +L  +  R SG GG  VN   + V + H+PTG  ++  + R Q  NR+ A + L  
Sbjct: 236 IAEKDLKIETKRASGAGGQHVNTTDSAVRIVHLPTGLAVEAQSERSQLKNRELAMKRLRS 295

Query: 409 KLDDMINGPESVSAQRKLIEEKKYKRNATKKQKI 308
           +L  +    ESV A  K+  +K  + +  + +KI
Sbjct: 296 RL--VQQQLESVEAS-KMATKKAQQGSLNRNEKI 326


>BT024311-1|ABC86373.1|  162|Drosophila melanogaster IP11653p
           protein.
          Length = 162

 Score = 30.3 bits (65), Expect = 3.3
 Identities = 17/71 (23%), Positives = 33/71 (46%)
 Frame = -1

Query: 490 PTGTVIKCHTSRCQDDNRKKARELLIEKLDDMINGPESVSAQRKLIEEKKYKRNATKKQK 311
           P  TVI    +     N K  ++ +  K    I GP+  + Q++L +    ++ A  ++ 
Sbjct: 48  PKDTVIAAQETGASSSNTKMPKQAVKHKGFKKIRGPKPKNGQKRL-KRNATQKKALNREM 106

Query: 310 ISKLKDEWKKR 278
           +SK  +  KK+
Sbjct: 107 VSKFLNSIKKK 117


>BT012301-1|AAS77426.1|  346|Drosophila melanogaster LP23408p
           protein.
          Length = 346

 Score = 29.5 bits (63), Expect = 5.8
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
 Frame = -1

Query: 649 FSPRLAAAFKHTIDYSKVPKINE--CELSEKFVRGSGPGGSAVNKNSNCVVLTHIPTG 482
           F  +L A FK+     +   IN+   E  E+FVR S  G + VN  +    +  +P+G
Sbjct: 209 FGDQLCATFKYVNAVPQFKSINDGNWETIERFVRNSVTGNNFVNVRTGARGVLSLPSG 266


>AE014297-4252|AAF56805.2|  346|Drosophila melanogaster CG14062-PB
           protein.
          Length = 346

 Score = 29.5 bits (63), Expect = 5.8
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
 Frame = -1

Query: 649 FSPRLAAAFKHTIDYSKVPKINE--CELSEKFVRGSGPGGSAVNKNSNCVVLTHIPTG 482
           F  +L A FK+     +   IN+   E  E+FVR S  G + VN  +    +  +P+G
Sbjct: 209 FGDQLCATFKYVNAVPQFKSINDGNWETIERFVRNSVTGNNFVNVRTGARGVLSLPSG 266


>AE014296-1334|AAN12027.1|  570|Drosophila melanogaster CG17888-PC,
           isoform C protein.
          Length = 570

 Score = 29.1 bits (62), Expect = 7.6
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = -1

Query: 571 SEKFVRGSGPGGSAVNKNSNCVVLTHIPTGTVIKCHTSRCQDDN 440
           S   V G  PG ++ N N+N  +L H     +I  H S   ++N
Sbjct: 182 SSNNVTGGSPGSNSNNNNNNNNILNHNNLNIIINNHASLNNNNN 225


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,289,721
Number of Sequences: 53049
Number of extensions: 741476
Number of successful extensions: 2146
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2026
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2142
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3860063376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)