Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10a02
         (814 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8RG67 Cluster: ABC transporter ATP-binding protein; n=...    35   2.8  
UniRef50_Q22D57 Cluster: Putative uncharacterized protein; n=1; ...    34   3.7  
UniRef50_Q8ILA2 Cluster: Putative uncharacterized protein; n=2; ...    34   4.9  
UniRef50_Q7RHE7 Cluster: GYF domain, putative; n=7; Plasmodium (...    33   8.6  
UniRef50_A7TFT5 Cluster: Putative uncharacterized protein; n=1; ...    33   8.6  

>UniRef50_Q8RG67 Cluster: ABC transporter ATP-binding protein; n=1;
           Fusobacterium nucleatum subsp. nucleatum|Rep: ABC
           transporter ATP-binding protein - Fusobacterium
           nucleatum subsp. nucleatum
          Length = 671

 Score = 34.7 bits (76), Expect = 2.8
 Identities = 17/64 (26%), Positives = 30/64 (46%)
 Frame = -3

Query: 359 NCGIQIQKSTELINSNKKKIRAQCAQQCLPQNNHNRESIKCLWESTVHNKPFRNYYSYNV 180
           NC ++I  + E+I   KK+I        L +   N+E+IK  +E+T      +N++    
Sbjct: 242 NCNMEISSAEEIIEKTKKEIEKHTEGATLQKEIDNKENIKEAYENT-RKSEIKNFFEIFN 300

Query: 179 TKRW 168
              W
Sbjct: 301 NNYW 304


>UniRef50_Q22D57 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 1062

 Score = 34.3 bits (75), Expect = 3.7
 Identities = 21/76 (27%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
 Frame = -3

Query: 407 SHVLLDKACAKSIETANCGIQIQK-STELINSNKKKIRAQCAQQCLPQNNHNRESIKCLW 231
           S++  +   A++IET+N  + IQ  S +++N NKK       Q    QN++++E+++  W
Sbjct: 446 SNIKTELNIAQNIETSNLYVTIQGGSNQIVNYNKKLYLVSDFQDLEIQNSNSQENLQFKW 505

Query: 230 ESTVHNKPFRNYYSYN 183
             T  N   +++  Y+
Sbjct: 506 --TCFNPTNKDHICYD 519


>UniRef50_Q8ILA2 Cluster: Putative uncharacterized protein; n=2;
            Plasmodium|Rep: Putative uncharacterized protein -
            Plasmodium falciparum (isolate 3D7)
          Length = 2269

 Score = 33.9 bits (74), Expect = 4.9
 Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
 Frame = -3

Query: 782  KLCNDIVQAD-DRPNTTPPRVKLSKITFQSTN---KVNGKIYRSVTLEKRK 642
            K  N + Q + D+PN T  ++K+ KITF S N   ++N  I+ ++ L   K
Sbjct: 2161 KYVNQVYQKEYDKPNVTKYQLKVKKITFNSKNQSKQINNTIFNNLDLYNNK 2211


>UniRef50_Q7RHE7 Cluster: GYF domain, putative; n=7; Plasmodium
            (Vinckeia)|Rep: GYF domain, putative - Plasmodium yoelii
            yoelii
          Length = 2169

 Score = 33.1 bits (72), Expect = 8.6
 Identities = 10/24 (41%), Positives = 19/24 (79%)
 Frame = -3

Query: 269  QNNHNRESIKCLWESTVHNKPFRN 198
            QNN+N ++I+ +W + ++N+PF N
Sbjct: 1194 QNNYNSQNIQNIWNNEINNQPFNN 1217


>UniRef50_A7TFT5 Cluster: Putative uncharacterized protein; n=1;
           Vanderwaltozyma polyspora DSM 70294|Rep: Putative
           uncharacterized protein - Vanderwaltozyma polyspora DSM
           70294
          Length = 1507

 Score = 33.1 bits (72), Expect = 8.6
 Identities = 17/62 (27%), Positives = 29/62 (46%)
 Frame = -3

Query: 779 LCNDIVQADDRPNTTPPRVKLSKITFQSTNKVNGKIYRSVTLEKRKVTGKPAPHAENVKR 600
           +   + Q D  P TT P  K +K   Q+T +   +  +  +LEK K   K    ++  K+
Sbjct: 135 ILESLQQLDGEPETTKPAAKTTKPKKQATRRKKNEKPKEPSLEKEKKKPKQPAKSKRKKK 194

Query: 599 KP 594
           +P
Sbjct: 195 EP 196


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 747,011,777
Number of Sequences: 1657284
Number of extensions: 14573069
Number of successful extensions: 34555
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 33296
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34545
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 70377768045
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)