Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10a02
         (814 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U77412-1|AAB63465.1| 1151|Caenorhabditis elegans O-linked GlcNAc...    31   1.3  
U21320-1|AAA62535.2| 1151|Caenorhabditis elegans O-linked glcnac...    31   1.3  
U41016-10|AAA82321.2| 1656|Caenorhabditis elegans Hypothetical p...    30   1.7  
Z70206-3|CAA94123.1|  176|Caenorhabditis elegans Hypothetical pr...    29   5.2  
AC024751-3|AAK21513.2|  440|Caenorhabditis elegans Hypothetical ...    29   5.2  
Z81083-3|CAB03104.1|  559|Caenorhabditis elegans Hypothetical pr...    28   6.9  
AL132904-4|CAC35836.2|  582|Caenorhabditis elegans Hypothetical ...    28   6.9  
AF077542-1|AAC26295.2|  386|Caenorhabditis elegans Serpentine re...    28   6.9  
AF016446-4|AAC24164.1|  321|Caenorhabditis elegans Serpentine re...    28   6.9  
AC006629-9|ABC48255.1|  319|Caenorhabditis elegans Hypothetical ...    28   6.9  
Z81067-5|CAD92378.1|  965|Caenorhabditis elegans Hypothetical pr...    28   9.1  
U41104-5|AAK18976.3| 1564|Caenorhabditis elegans Twik family of ...    28   9.1  
U21309-3|AAN73880.2|  143|Caenorhabditis elegans Hypothetical pr...    28   9.1  
AF078157-12|AAG24073.1|  338|Caenorhabditis elegans Hypothetical...    28   9.1  
AF026215-3|AAB71323.3|  563|Caenorhabditis elegans Hypothetical ...    28   9.1  

>U77412-1|AAB63465.1| 1151|Caenorhabditis elegans O-linked GlcNAc
           transferase protein.
          Length = 1151

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = -3

Query: 788 AQKLCNDIVQADDRPNTTPPRVKLSKITFQSTNKVNGKIYRSVTLE 651
           A+K CN + Q+D  PN  P  + LS I FQ+ N      Y  + ++
Sbjct: 144 AEKYCNLVFQSD--PNNLPTLLLLSAINFQTKNLEKSMQYSMLAIK 187


>U21320-1|AAA62535.2| 1151|Caenorhabditis elegans O-linked glcnac
           transferase protein1, isoform a protein.
          Length = 1151

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = -3

Query: 788 AQKLCNDIVQADDRPNTTPPRVKLSKITFQSTNKVNGKIYRSVTLE 651
           A+K CN + Q+D  PN  P  + LS I FQ+ N      Y  + ++
Sbjct: 144 AEKYCNLVFQSD--PNNLPTLLLLSAINFQTKNLEKSMQYSMLAIK 187


>U41016-10|AAA82321.2| 1656|Caenorhabditis elegans Hypothetical
           protein R11G1.1 protein.
          Length = 1656

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 16/67 (23%), Positives = 28/67 (41%)
 Frame = -3

Query: 644 KVTGKPAPHAENVKRKPEKKFNQKIFADIAVNTLVTGPLRCDNECVTLIRKRGDSLNCRC 465
           K T  P+     +  +    F     + +   T+ TG  + D +C+  +   G S+ C C
Sbjct: 588 KTTPTPSSGTSTIVTENSSTFESVSTSSVPTTTVKTGDPQVD-DCLRRMSDSGGSVICDC 646

Query: 464 PSKQVNN 444
           P+ Q  N
Sbjct: 647 PNGQFKN 653


>Z70206-3|CAA94123.1|  176|Caenorhabditis elegans Hypothetical
           protein C49F8.3 protein.
          Length = 176

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = -3

Query: 359 NCGIQIQKSTELINSNK-KKIRAQCAQQCLPQNNHNR 252
           +C  Q   ++E   SN   ++  QC Q C PQ+N  R
Sbjct: 101 HCAAQTHDNSECCRSNGVAELGEQCVQMCQPQSNPRR 137


>AC024751-3|AAK21513.2|  440|Caenorhabditis elegans Hypothetical
           protein Y18H1A.10 protein.
          Length = 440

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 14/58 (24%), Positives = 26/58 (44%)
 Frame = +3

Query: 639 DFPFF*SYRAINFSINFVCTLEGNFTEFHSRWCCVWTIVCLHYVIAKLLCTPGTFNNR 812
           D P F  YR +  +  +     GN+ +F  R   +W +   + +I   +C  G F ++
Sbjct: 339 DAPQFEVYREMRENCRYRYRYRGNWEKFSRRTNLMWIVYIANRLIDTEICPEGLFTDK 396


>Z81083-3|CAB03104.1|  559|Caenorhabditis elegans Hypothetical
           protein F44F1.4 protein.
          Length = 559

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = -3

Query: 794 RRAQKLCNDIVQADDRPNTTPPRVKLSKIT--FQSTNKVNGKIYRSVTLEK 648
           +R  KLC DIVQ   +   +      +  T  F +TNKV      SVT EK
Sbjct: 236 QRCSKLCGDIVQVVSKTTGSYSTYNYTIYTGKFNNTNKVYCTSCNSVTSEK 286


>AL132904-4|CAC35836.2|  582|Caenorhabditis elegans Hypothetical
           protein Y111B2A.8 protein.
          Length = 582

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
 Frame = -3

Query: 767 IVQADDRPNTTPPRVKLSKITFQST--NKVNGKIYRSV--TLEKRKVTGKPAPHAENVKR 600
           ++  DD P T PP  K  K  +  T  +K +G + R++     KR+     A H    + 
Sbjct: 29  VISVDDEPTTAPPVTKPVKKGWIKTAKSKASGTLRRTLFGRSTKRRAKDAEAIHEAGEEE 88

Query: 599 KPEKKFNQ 576
           + E+ + Q
Sbjct: 89  EDEEDYTQ 96


>AF077542-1|AAC26295.2|  386|Caenorhabditis elegans Serpentine
           receptor, class w protein66 protein.
          Length = 386

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +3

Query: 519 ITPQRTSYKGINCNVCKDFLIKFFLRFSFDVFS 617
           IT + TS+ G+   + + F+IKF L   FD  S
Sbjct: 121 ITRRMTSFFGVLMTIVRFFIIKFALNRKFDTIS 153


>AF016446-4|AAC24164.1|  321|Caenorhabditis elegans Serpentine
           receptor, class h protein23 protein.
          Length = 321

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 14/53 (26%), Positives = 28/53 (52%)
 Frame = +2

Query: 2   FQFYRHTCTFKMLPTSKTLLTRIWFDRNIPYITNRR*KKFGIFKNLVLGLDAD 160
           F+ + H+  F  LPT    L  ++F ++  ++T R    + +F+NL   + +D
Sbjct: 11  FRIFTHSIHFVSLPTYFLALFSLFFIKSKVFVTYRYFLLWHVFENLFFEMHSD 63


>AC006629-9|ABC48255.1|  319|Caenorhabditis elegans Hypothetical
           protein F12E12.10 protein.
          Length = 319

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -3

Query: 530 LRCDNECVTLIRKRGDSLNCRCPSKQVNN 444
           +   N  V +I   G+S NCR P   +NN
Sbjct: 56  IEISNRLVVIIALHGESFNCRIPLNGLNN 84


>Z81067-5|CAD92378.1|  965|Caenorhabditis elegans Hypothetical
           protein F23A7.7 protein.
          Length = 965

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -3

Query: 383 CAKSIETANCGIQIQKSTELINSNKKK 303
           CA+++E   CG Q Q+  ELI  N KK
Sbjct: 184 CARNLEICECGSQ-QEKCELIYGNLKK 209


>U41104-5|AAK18976.3| 1564|Caenorhabditis elegans Twik family of
            potassium channelsprotein 2 protein.
          Length = 1564

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -3

Query: 389  KACAKSIETANCGIQIQKSTELINSNKKKIRAQCAQQC 276
            K CAK+++   C   +QK  +    N +K+  +CA+ C
Sbjct: 1272 KKCAKNVQ--KCAKNVQKMCKKCAKNVQKMCKKCAKMC 1307


>U21309-3|AAN73880.2|  143|Caenorhabditis elegans Hypothetical
           protein C13B9.1 protein.
          Length = 143

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -3

Query: 383 CAKSIETANCGIQIQKSTELINSNKKK 303
           CA+++E   CG Q Q+  ELI  N KK
Sbjct: 60  CARNLEICECGSQ-QEKCELIYGNLKK 85


>AF078157-12|AAG24073.1|  338|Caenorhabditis elegans Hypothetical
           protein F25E5.2 protein.
          Length = 338

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
 Frame = +3

Query: 645 PFF*SYRAINFSINF---VCTLEGNFTEFHSRWCC 740
           PF   YR  NF       +C ++GNF E ++  CC
Sbjct: 94  PFADGYRTDNFIPKHNLAICEIKGNFPELNAAICC 128


>AF026215-3|AAB71323.3|  563|Caenorhabditis elegans Hypothetical
           protein F09G2.5 protein.
          Length = 563

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 17  HTCTFKMLPTSKTLLTRIWF 76
           H CT  +L TSK +  RIW+
Sbjct: 186 HNCTHPILVTSKLIADRIWY 205


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,983,889
Number of Sequences: 27780
Number of extensions: 381651
Number of successful extensions: 1073
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1004
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1073
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1998381620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)