Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10a01
         (378 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0001509E2E Cluster: Sodium/calcium exchanger protein...    33   1.8  
UniRef50_Q98R21 Cluster: Putative uncharacterized protein MYPU_1...    31   7.1  
UniRef50_A5A8E6 Cluster: Polymerase for repeating unit of recept...    31   7.1  
UniRef50_UPI0000661166 Cluster: UPI0000661166 related cluster; n...    31   9.4  
UniRef50_Q9RWW5 Cluster: MutT/nudix family protein; n=2; Deinoco...    31   9.4  
UniRef50_A5FFP3 Cluster: UbiA prenyltransferase precursor; n=3; ...    31   9.4  
UniRef50_Q9GZI4 Cluster: Putative uncharacterized protein W09B6....    31   9.4  

>UniRef50_UPI0001509E2E Cluster: Sodium/calcium exchanger protein;
           n=1; Tetrahymena thermophila SB210|Rep: Sodium/calcium
           exchanger protein - Tetrahymena thermophila SB210
          Length = 602

 Score = 33.1 bits (72), Expect = 1.8
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = +3

Query: 246 FYFTLLSFIVEVLYIKFLIQILYTFYHF 329
           F+F+LL+F++ V YI  + QIL  F  F
Sbjct: 430 FFFSLLAFVISVAYISTIAQILIDFIQF 457


>UniRef50_Q98R21 Cluster: Putative uncharacterized protein
           MYPU_1890; n=1; Mycoplasma pulmonis|Rep: Putative
           uncharacterized protein MYPU_1890 - Mycoplasma pulmonis
          Length = 129

 Score = 31.1 bits (67), Expect = 7.1
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = +3

Query: 231 FNLSHFYFTLLSFIVEVLYIKFLIQILYTFYHFHFNEVTLLMLI 362
           F +S F F  L FI+ V+ I  +I  LY+  +  F + TL   I
Sbjct: 21  FQISRFIFAFLQFIIIVINISLIILNLYSIRYNAFPDETLHFFI 64


>UniRef50_A5A8E6 Cluster: Polymerase for repeating unit of receptor
           polysaccharide; n=5; Streptococcus|Rep: Polymerase for
           repeating unit of receptor polysaccharide -
           Streptococcus gordonii
          Length = 391

 Score = 31.1 bits (67), Expect = 7.1
 Identities = 16/43 (37%), Positives = 26/43 (60%)
 Frame = +3

Query: 249 YFTLLSFIVEVLYIKFLIQILYTFYHFHFNEVTLLMLI*RLFI 377
           Y  LL F + +++IK L+ +  + YHF F+   LL+ +  LFI
Sbjct: 44  YRILLYFTIAMIFIKELVNLPRSLYHFRFHWEQLLIAV--LFI 84


>UniRef50_UPI0000661166 Cluster: UPI0000661166 related cluster; n=1;
           Takifugu rubripes|Rep: UPI0000661166 UniRef100 entry -
           Takifugu rubripes
          Length = 253

 Score = 30.7 bits (66), Expect = 9.4
 Identities = 10/38 (26%), Positives = 27/38 (71%)
 Frame = +3

Query: 243 HFYFTLLSFIVEVLYIKFLIQILYTFYHFHFNEVTLLM 356
           H Y+T+++ ++ + Y   +I +LY +Y++++  +TL++
Sbjct: 199 HRYYTIITLVL-LWYYTGIILVLYWYYYWYYTGITLVL 235


>UniRef50_Q9RWW5 Cluster: MutT/nudix family protein; n=2;
           Deinococcus|Rep: MutT/nudix family protein - Deinococcus
           radiodurans
          Length = 250

 Score = 30.7 bits (66), Expect = 9.4
 Identities = 18/46 (39%), Positives = 21/46 (45%)
 Frame = +1

Query: 7   QEVRLRRRLPMQPRVNPYHKASARTTRSPTSKIPCILGSERSSGLP 144
           Q  R RRR P Q   NP       TT +PT   P   G +R +G P
Sbjct: 37  QRRRRRRRTPPQQPQNPRPGQVTNTTATPTPAPPKKRGQKRPAGEP 82


>UniRef50_A5FFP3 Cluster: UbiA prenyltransferase precursor; n=3;
           Flavobacteriales|Rep: UbiA prenyltransferase precursor -
           Flavobacterium johnsoniae UW101
          Length = 308

 Score = 30.7 bits (66), Expect = 9.4
 Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 4/45 (8%)
 Frame = +3

Query: 252 FTLLSFIVEVLYI-KFLIQ---ILYTFYHFHFNEVTLLMLI*RLF 374
           FT++ FI+ +LYI K+  Q   ++ TFY F F    LL  I ++F
Sbjct: 227 FTIIPFILSLLYINKYFFQNNLLIVTFYTFVFVLAPLLYFIVKIF 271


>UniRef50_Q9GZI4 Cluster: Putative uncharacterized protein W09B6.5;
           n=1; Caenorhabditis elegans|Rep: Putative
           uncharacterized protein W09B6.5 - Caenorhabditis elegans
          Length = 270

 Score = 30.7 bits (66), Expect = 9.4
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +3

Query: 228 FFNLSHFYFTLLSFIVEVLYIKFLIQILYTFYHF 329
           FF   +FYF + +F +   Y   LI ++YTF HF
Sbjct: 230 FFLAKNFYFQIFNFFIANQY---LITLIYTFSHF 260


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 317,572,492
Number of Sequences: 1657284
Number of extensions: 5314532
Number of successful extensions: 12099
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12091
length of database: 575,637,011
effective HSP length: 91
effective length of database: 424,824,167
effective search space used: 14444021678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)