Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10a01
         (378 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2G11.13 |atg22||autophagy associated protein Atg22 |Schizosa...    26   2.3  
SPAC3A12.18 |zwf1|SPAC9.01|glucose-6-phosphate 1-dehydrogenase |...    25   3.9  
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    24   9.1  
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom...    24   9.1  

>SPAC2G11.13 |atg22||autophagy associated protein Atg22
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 529

 Score = 25.8 bits (54), Expect = 2.3
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +3

Query: 234 NLSHFYFTLLSFIVEVLYIKFLIQILYTFYHFHFNEVTLLMLI 362
           NLS+F  TLL   +    +   + I Y   +F  N + ++M+I
Sbjct: 359 NLSNFQLTLLGMGISSFALLGTVIIPYLTEYFQLNSLQVVMII 401


>SPAC3A12.18 |zwf1|SPAC9.01|glucose-6-phosphate 1-dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 500

 Score = 25.0 bits (52), Expect = 3.9
 Identities = 11/23 (47%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = +1

Query: 82  TRSPT-SKIPCILGSERSSGLPW 147
           +R PT S IPC + +ER  G+P+
Sbjct: 313 SRCPTYSAIPCFIDTERWRGVPF 335


>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1666

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +3

Query: 258  LLSFIVEVLYIKFLIQILYTFYHFHFNEVTL 350
            L+ + VE+   +    ILYT YH   N++ +
Sbjct: 1548 LMKYFVEIGNYECFAAILYTCYHLLRNDLVM 1578


>SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1150

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = +1

Query: 28   RLPMQPRVNPYHKASARTTRSPTSKIPCILGSERSSG 138
            ++ +  R  P H AS +  R P  ++   L S+  SG
Sbjct: 1075 QMSLDERNTPKHTASTKRKRQPIRRVTTNLTSDVPSG 1111


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,352,478
Number of Sequences: 5004
Number of extensions: 22827
Number of successful extensions: 39
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 122233080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)