Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc19c18
         (621 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039713-1|AAB96725.1|  268|Caenorhabditis elegans Hypothetical ...   136   9e-33
Z83127-4|CAB05631.1|  872|Caenorhabditis elegans Hypothetical pr...    32   0.29 
Z68297-5|CAC70081.1|  394|Caenorhabditis elegans Hypothetical pr...    31   0.66 
Z68882-10|CAA93111.1|  397|Caenorhabditis elegans Hypothetical p...    29   3.5  
Z97628-2|CAB10726.2|  427|Caenorhabditis elegans Hypothetical pr...    28   4.7  
Z81080-5|CAB03088.2|  427|Caenorhabditis elegans Hypothetical pr...    28   4.7  
Z81080-2|CAD56584.1|  358|Caenorhabditis elegans Hypothetical pr...    28   4.7  
AF016683-1|AAB66199.3| 1360|Caenorhabditis elegans Hypothetical ...    28   4.7  
U97000-9|AAC47998.1|  345|Caenorhabditis elegans Seven tm recept...    28   6.2  
U58760-5|AAK31464.1| 1076|Caenorhabditis elegans Hypothetical pr...    28   6.2  
L07144-10|AAK21437.1| 1327|Caenorhabditis elegans Hypothetical p...    28   6.2  
AF016684-13|AAB66203.1|  470|Caenorhabditis elegans Hypothetical...    28   6.2  
Z99281-12|CAB16521.1|  649|Caenorhabditis elegans Hypothetical p...    27   8.2  
AF022984-1|AAB69953.1|  540|Caenorhabditis elegans Hypothetical ...    27   8.2  

>AF039713-1|AAB96725.1|  268|Caenorhabditis elegans Hypothetical
           protein F57B10.8 protein.
          Length = 268

 Score =  136 bits (330), Expect = 9e-33
 Identities = 70/189 (37%), Positives = 113/189 (59%), Gaps = 3/189 (1%)
 Frame = -2

Query: 560 KTCEMPDVETERVPENGTDCEINQKNIDRTSKFDNKLLKQKIRKRGIIFLSTIPPYMNVA 381
           ++ E  + E E    + ++ +  +   D    F++   KQK  K G++F STIPP  NV 
Sbjct: 39  ESIETDNNEDEAGNLDDSEIKTEESEDDEMETFEDPEQKQK--KTGVVFFSTIPPKYNVV 96

Query: 380 KIREIFSQF--GEVGRIYLQPTGKPGEKRKRVPNQ-FSEGWVEFEKKKIAKQVAVKLNNT 210
           ++RE F +   G+VGRI+L        K  + P   +SEGW+E +KKKIAK +A +++NT
Sbjct: 97  RMREYFEKRCPGQVGRIFLARN-----KHSKNPQYLYSEGWMELKKKKIAKAIAEQIDNT 151

Query: 209 KIGTRKKSRYYDMIWNIKYIPRFKWIHLSERLAYERAAMKQRLRAEIAQAKKEAHYLQSN 30
            IG + K     M+WNI+Y+  FKW+HL E+L YE+   K+R+  E+AQA++ A + +  
Sbjct: 152 PIGGKNKDPVSSMLWNIRYLSGFKWVHLMEQLQYEKEVEKRRMNVEVAQARRIAAHFEEQ 211

Query: 29  VEKSKKIKR 3
           +EK K +++
Sbjct: 212 IEKGKHLRK 220


>Z83127-4|CAB05631.1|  872|Caenorhabditis elegans Hypothetical
           protein T23F6.4 protein.
          Length = 872

 Score = 32.3 bits (70), Expect = 0.29
 Identities = 20/81 (24%), Positives = 38/81 (46%)
 Frame = -2

Query: 551 EMPDVETERVPENGTDCEINQKNIDRTSKFDNKLLKQKIRKRGIIFLSTIPPYMNVAKIR 372
           E P+ E E + E+G   E   K        + + +++KI + G +FL  +P       ++
Sbjct: 245 ETPEPEHEVIEEHGASLESRDK--------EEETVREKILETGRLFLRNLPYATKEDDLQ 296

Query: 371 EIFSQFGEVGRIYLQPTGKPG 309
            +F ++GEV  + +    K G
Sbjct: 297 FLFKKYGEVSEVQVVIDKKTG 317


>Z68297-5|CAC70081.1|  394|Caenorhabditis elegans Hypothetical
           protein F11A10.7 protein.
          Length = 394

 Score = 31.1 bits (67), Expect = 0.66
 Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 7/70 (10%)
 Frame = -2

Query: 479 DRTSKFDNKLLKQKIRKRGI------IFLSTIPPYMNVAKIREIFSQFGEVGRIYLQPTG 318
           DRT + +N+ L++   +         +F+  +P  MN   +R IFS FG +  + ++   
Sbjct: 119 DRTKQRENRTLQKSNARASAAENALTVFVGNMPLTMNEKSVRRIFSDFGTISSVRMRNLL 178

Query: 317 KPGEK-RKRV 291
              EK  KRV
Sbjct: 179 PANEKLTKRV 188


>Z68882-10|CAA93111.1|  397|Caenorhabditis elegans Hypothetical
           protein C47E12.7 protein.
          Length = 397

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 20/95 (21%), Positives = 45/95 (47%), Gaps = 1/95 (1%)
 Frame = -2

Query: 284 QFSEGWVEFEKKKIAKQVAVKLNNTKIGTRKKSRYYDMIWNIKYIPRFKWIHLSERLAYE 105
           +  +G +EF  K+I   +        +  +++ + YD++       R +     + L +E
Sbjct: 233 EMDQGGIEFSYKEIGALLFEVGKQEHLNAKRRKKIYDLVKKFDKSSRGQ-----DPLHFE 287

Query: 104 RAAMKQRL-RAEIAQAKKEAHYLQSNVEKSKKIKR 3
               K+RL R +  +A+K+A  L ++ ++ +K  R
Sbjct: 288 TPVPKERLTRHDYEEAEKKAIVLANSFKQERKSSR 322


>Z97628-2|CAB10726.2|  427|Caenorhabditis elegans Hypothetical
           protein F39H2.2a protein.
          Length = 427

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 16/83 (19%), Positives = 37/83 (44%)
 Frame = -2

Query: 440 KIRKRGIIFLSTIPPYMNVAKIREIFSQFGEVGRIYLQPTGKPGEKRKRVPNQFSEGWVE 261
           ++    ++F+  + P      +  IFS+FG++    +        + +R  +     ++E
Sbjct: 236 EVPPENVLFVCKLNPVTTDEDLEIIFSRFGKINNCEI-------VRDRRSGDSLQYAFIE 288

Query: 260 FEKKKIAKQVAVKLNNTKIGTRK 192
           F+  K  +Q   K++N  I  R+
Sbjct: 289 FDNAKSCEQAFFKMDNVLIDDRR 311


>Z81080-5|CAB03088.2|  427|Caenorhabditis elegans Hypothetical
           protein F39H2.2a protein.
          Length = 427

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 16/83 (19%), Positives = 37/83 (44%)
 Frame = -2

Query: 440 KIRKRGIIFLSTIPPYMNVAKIREIFSQFGEVGRIYLQPTGKPGEKRKRVPNQFSEGWVE 261
           ++    ++F+  + P      +  IFS+FG++    +        + +R  +     ++E
Sbjct: 236 EVPPENVLFVCKLNPVTTDEDLEIIFSRFGKINNCEI-------VRDRRSGDSLQYAFIE 288

Query: 260 FEKKKIAKQVAVKLNNTKIGTRK 192
           F+  K  +Q   K++N  I  R+
Sbjct: 289 FDNAKSCEQAFFKMDNVLIDDRR 311


>Z81080-2|CAD56584.1|  358|Caenorhabditis elegans Hypothetical
           protein F39H2.2b protein.
          Length = 358

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 16/83 (19%), Positives = 37/83 (44%)
 Frame = -2

Query: 440 KIRKRGIIFLSTIPPYMNVAKIREIFSQFGEVGRIYLQPTGKPGEKRKRVPNQFSEGWVE 261
           ++    ++F+  + P      +  IFS+FG++    +        + +R  +     ++E
Sbjct: 167 EVPPENVLFVCKLNPVTTDEDLEIIFSRFGKINNCEI-------VRDRRSGDSLQYAFIE 219

Query: 260 FEKKKIAKQVAVKLNNTKIGTRK 192
           F+  K  +Q   K++N  I  R+
Sbjct: 220 FDNAKSCEQAFFKMDNVLIDDRR 242


>AF016683-1|AAB66199.3| 1360|Caenorhabditis elegans Hypothetical
           protein K09F6.3 protein.
          Length = 1360

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 14/51 (27%), Positives = 25/51 (49%)
 Frame = -2

Query: 305 KRKRVPNQFSEGWVEFEKKKIAKQVAVKLNNTKIGTRKKSRYYDMIWNIKY 153
           KR ++ N   E   + EK+KIA+++A +        +KK    D+   + Y
Sbjct: 811 KRNKIANDDMEQGTKIEKEKIARELAAQEAQNIEAEKKKKEIKDLEAKVDY 861


>U97000-9|AAC47998.1|  345|Caenorhabditis elegans Seven tm receptor
           protein 135 protein.
          Length = 345

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
 Frame = +2

Query: 374 VFWQRSCKGESSTKILYLVFV---FSVLIICYQI*MFCLY 484
           ++W +   G+    I  L+     F+VLIIC+   +FC Y
Sbjct: 188 MYWTKGADGQIHWNIFELISALSCFAVLIICFFTIVFCAY 227


>U58760-5|AAK31464.1| 1076|Caenorhabditis elegans Hypothetical
           protein C27A2.1 protein.
          Length = 1076

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = -2

Query: 95  MKQRLRAEIAQAKKEAHYLQSNVEKSKKI 9
           M QR +A++  AKK A   + +VEK++K+
Sbjct: 318 MMQRAKAKLESAKKAADQHEKDVEKARKM 346


>L07144-10|AAK21437.1| 1327|Caenorhabditis elegans Hypothetical
           protein R05D3.11 protein.
          Length = 1327

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
 Frame = -2

Query: 266 VEFEKKKI--AKQVAVKLNNTKIGTRKKSRYYDMIWNIKYIPRFKWIHLSERLAYERAAM 93
           V  EKK +   K++  K+N  +I      +      N+ Y   F WI  S R AY R  M
Sbjct: 567 VASEKKSVFSLKEMIAKMNAAQIAIMV-GQPVGKEGNLDYFLTFHWIRQSHRSAYIRDFM 625

Query: 92  KQ 87
           K+
Sbjct: 626 KE 627


>AF016684-13|AAB66203.1|  470|Caenorhabditis elegans Hypothetical
           protein F45C12.3 protein.
          Length = 470

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 19/83 (22%), Positives = 38/83 (45%)
 Frame = -2

Query: 335 YLQPTGKPGEKRKRVPNQFSEGWVEFEKKKIAKQVAVKLNNTKIGTRKKSRYYDMIWNIK 156
           YL+  G PG++  R P + ++   E E KK    +++  +   I T K  R     W  +
Sbjct: 112 YLRHRGPPGQRNSRWPQEVNDLLAE-EYKKNKTPISMDFDRLSIETGKTQRQIKQ-WFWR 169

Query: 155 YIPRFKWIHLSERLAYERAAMKQ 87
           +  +    +  +R+  E  A+++
Sbjct: 170 HKAKQSTTNYQQRVTAEPYAVRK 192


>Z99281-12|CAB16521.1|  649|Caenorhabditis elegans Hypothetical
           protein Y57G11C.20 protein.
          Length = 649

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 20/74 (27%), Positives = 34/74 (45%)
 Frame = -2

Query: 257 EKKKIAKQVAVKLNNTKIGTRKKSRYYDMIWNIKYIPRFKWIHLSERLAYERAAMKQRLR 78
           E+ KI  +V       K   R  S Y+D+   I   P  + I+   +L++ER     R R
Sbjct: 443 ERDKIVSKVRESEAIEKEAVRASSEYHDVALKIFQKPNDRNIYDELKLSFERI----RSR 498

Query: 77  AEIAQAKKEAHYLQ 36
            +++  +  + YLQ
Sbjct: 499 IKVSHFENSSDYLQ 512


>AF022984-1|AAB69953.1|  540|Caenorhabditis elegans Hypothetical
           protein ZK488.6 protein.
          Length = 540

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -2

Query: 536 ETERVPENGTDCEINQKNIDRTSKFDNKLLKQKIRKR 426
           E +  P+N TDC   Q N  RT    N    +K+ K+
Sbjct: 98  ENKIFPQNSTDCPYEQWNQVRTDFIPNMNFHKKLSKK 134


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,975,996
Number of Sequences: 27780
Number of extensions: 273214
Number of successful extensions: 1024
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 979
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1023
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1353389824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)