Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc19c16
         (341 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    27   1.1  
SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyc...    25   3.2  
SPAP14E8.03 |bos1||SNARE Bos1|Schizosaccharomyces pombe|chr 1|||...    25   3.2  
SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr ...    24   5.6  
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp...    24   7.5  
SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase Cdc...    24   7.5  
SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce...    23   9.8  

>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 26.6 bits (56), Expect = 1.1
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = +2

Query: 167  QSHTMSIRCKLIHHPCAAYHIK 232
            +S T+++   L+H+P + YHI+
Sbjct: 1251 KSETVTVHYDLLHNPASCYHIR 1272


>SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 767

 Score = 25.0 bits (52), Expect = 3.2
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = -1

Query: 173 GTVLLTDHFYKYFKYVRPQIQASKAAAEQELLSEGSSEKI 54
           G     DH  +   ++RP + +   AA  EL S  SS  +
Sbjct: 219 GRTYYVDHNTRSTTWIRPNLSSVAGAAAAELHSSASSANV 258


>SPAP14E8.03 |bos1||SNARE Bos1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 235

 Score = 25.0 bits (52), Expect = 3.2
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +3

Query: 261 TKKDKNVNYF*ASLVCFLFNLIYNYL 338
           +K+DK + Y  A LV  LF LIY +L
Sbjct: 209 SKQDKIIFYCGAFLVFVLFYLIYRWL 234


>SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 293

 Score = 24.2 bits (50), Expect = 5.6
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = +1

Query: 163 RTVPYNVNPMQTNTPPLCSLSYKALRD 243
           + + Y+V+P  TN+    SL+Y++ R+
Sbjct: 117 QAMSYSVSPTSTNSSVATSLNYQSSRE 143


>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
           Spt6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1365

 Score = 23.8 bits (49), Expect = 7.5
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = -1

Query: 239 RNALYDKLHKGGVLVCIGLTLYGTVLLTDHFYKYFKYVR 123
           R +  DKL+  GV+  +        + ++H Y  FKY++
Sbjct: 526 RKSFRDKLYNAGVVTVLATQKGVRKIGSEHPYYEFKYLK 564


>SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase
           Cdc25|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 596

 Score = 23.8 bits (49), Expect = 7.5
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -3

Query: 285 NSHFYPF*YHEEIRI 241
           NSH YPF Y+ E+ I
Sbjct: 502 NSHRYPFLYYPEVYI 516


>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1297

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = -1

Query: 275 FILFSTMKKYGSRNALYDKLHKGGVLVCIGLTLY 174
           F+L + ++ +    AL D L   G   CI L  Y
Sbjct: 880 FLLLNLIEAFNKARALRDSLDLNGKRYCIMLNQY 913


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,434,111
Number of Sequences: 5004
Number of extensions: 27563
Number of successful extensions: 70
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 100068878
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)