Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc19c16
         (341 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0188 + 7617838-7620231,7621856-7622071,7622167-7622328,762...    27   3.9  
11_01_0533 + 4214900-4215162,4215986-4219043,4219613-4221539,422...    27   5.1  
03_02_0702 + 10526895-10526958,10527141-10527284,10528028-105281...    26   6.7  
03_01_0177 + 1424773-1424850,1425307-1425391,1425498-1425577,142...    26   6.7  
09_03_0035 - 11765108-11765376,11765909-11766005,11766505-117665...    26   8.9  
03_06_0065 - 31399791-31399874,31399956-31400165,31400407-314005...    26   8.9  
02_05_0058 + 25478274-25478421,25478963-25479142,25479714-254800...    26   8.9  

>02_02_0188 +
           7617838-7620231,7621856-7622071,7622167-7622328,
           7622466-7622516,7622936-7623070,7623161-7623184,
           7623341-7623452,7623776-7623901,7624004-7624053,
           7624339-7624497,7624582-7624677,7624751-7624866,
           7624907-7624984,7624985-7625108,7625193-7625306,
           7625423-7625503,7625616-7625756,7625834-7625848
          Length = 1397

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +1

Query: 73  SDKSSCSAAALDACICGRTYLKY 141
           +D+ SC  A L AC C   + KY
Sbjct: 406 TDEYSCKEACLKACSCKAAFFKY 428


>11_01_0533 + 4214900-4215162,4215986-4219043,4219613-4221539,
            4221561-4222094,4222388-4222842,4223073-4223189,
            4223319-4223477
          Length = 2170

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 13/30 (43%), Positives = 21/30 (70%)
 Frame = -1

Query: 116  IQASKAAAEQELLSEGSSEKIM*RRIYVIF 27
            I++  AA E+ELLS  +  +++ R I+VIF
Sbjct: 1923 IRSLTAALERELLSTSTINEVILRTIHVIF 1952


>03_02_0702 +
           10526895-10526958,10527141-10527284,10528028-10528116,
           10528246-10528780,10528909-10529076,10529728-10529906,
           10530028-10530107,10530205-10530313,10530406-10530507,
           10531329-10531403,10531499-10531606,10532395-10532596,
           10532765-10533060
          Length = 716

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -2

Query: 145 TSTSSMCGHRYKHPKQLLNKSFCQKVLQRKLCK 47
           T+   MCG RYK  + LL  S   ++L  ++ K
Sbjct: 486 TNAGRMCGERYKAAEDLLKLSGRLRLLMAQIVK 518


>03_01_0177 +
           1424773-1424850,1425307-1425391,1425498-1425577,
           1425771-1425898,1425962-1426049,1426187-1426277,
           1426712-1426881,1427151-1427438,1427527-1427643,
           1427924-1427976,1428029-1428090,1429042-1429118,
           1429269-1429322,1429417-1429476,1429581-1429658,
           1429805-1429851,1429933-1430051,1430280-1430364,
           1430443-1430557,1430662-1430784,1430869-1430969,
           1431346-1431475
          Length = 742

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 8/23 (34%), Positives = 19/23 (82%)
 Frame = -1

Query: 296 RLKIIHIFILFSTMKKYGSRNAL 228
           R++++ +F+L  +++KYG++ AL
Sbjct: 388 RVQLVSLFVLLMSVRKYGAQYAL 410


>09_03_0035 -
           11765108-11765376,11765909-11766005,11766505-11766579,
           11767367-11767650,11768466-11768562
          Length = 273

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 233 ALYDKLHKGGVLVCIGLTLYGTVL 162
           A  +KLH G V++  GL +YG  L
Sbjct: 124 ACLEKLHNGVVVLAFGLLVYGKQL 147


>03_06_0065 -
           31399791-31399874,31399956-31400165,31400407-31400526,
           31401166-31401225,31401670-31401879,31402512-31402587,
           31403010-31403173,31403254-31403316,31403640-31403727,
           31403810-31404460,31405102-31405149,31405334-31405902
          Length = 780

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 176 YGTVLLTDHFYKYFKYVRP 120
           YG+  + D FY Y +YV P
Sbjct: 469 YGSEYIEDRFYIYLEYVHP 487


>02_05_0058 +
           25478274-25478421,25478963-25479142,25479714-25480007,
           25480261-25480564,25480672-25480751,25480765-25480934
          Length = 391

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -1

Query: 206 GVLVCIGLTLYGTVLLTDHFYKY 138
           GV+  +G TLY TVL  D   KY
Sbjct: 130 GVVERVGYTLYNTVLFFDPLGKY 152


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,708,539
Number of Sequences: 37544
Number of extensions: 161512
Number of successful extensions: 346
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 346
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 346
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 482105440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)