Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc19c16
         (341 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75541-3|CAA99855.1| 1425|Caenorhabditis elegans Hypothetical pr...    31   0.29 
Z30423-13|CAE52904.1|   89|Caenorhabditis elegans Hypothetical p...    27   2.7  
AL032660-4|CAE52908.1|   89|Caenorhabditis elegans Hypothetical ...    27   2.7  
U53155-10|AAC48271.1|  346|Caenorhabditis elegans Seven tm recep...    26   6.1  
Z99288-3|CAB16546.1|  353|Caenorhabditis elegans Hypothetical pr...    26   8.1  
Z70038-1|CAA93884.1| 2219|Caenorhabditis elegans Hypothetical pr...    26   8.1  

>Z75541-3|CAA99855.1| 1425|Caenorhabditis elegans Hypothetical protein
            F52B5.3 protein.
          Length = 1425

 Score = 30.7 bits (66), Expect = 0.29
 Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
 Frame = -1

Query: 275  FILFSTMKKY-GSRNALYDKLHKGGVLVCIGLTLYGTVLLTDHFYKYFKYVRPQIQASKA 99
            F+ FSTM+   G+R  L  +L +   L+ I        +LTDH +  F    P IQA  A
Sbjct: 970  FLNFSTMRMVQGTRRQLLRELVRAK-LINISPNRDVLTVLTDHHFNQFSQCWPMIQAVIA 1028

Query: 98   AAEQELLSEGSSE 60
            A     +   +SE
Sbjct: 1029 AGCYPFIGVSASE 1041


>Z30423-13|CAE52904.1|   89|Caenorhabditis elegans Hypothetical
           protein T20G5.14 protein.
          Length = 89

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = -1

Query: 236 NALYDKLHKGGVLVCIGLTLYGTVLLTDHFYKYFKYVRPQIQASKAAAEQELL 78
           N   D  HK  V   +G  ++ T     +   Y+K+VRP  Q  +   E+EL+
Sbjct: 26  NRRLDIAHKVIVRSILGFLVFSTSYCIINAGIYYKFVRPIRQEERELLERELI 78


>AL032660-4|CAE52908.1|   89|Caenorhabditis elegans Hypothetical
           protein T20G5.14 protein.
          Length = 89

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = -1

Query: 236 NALYDKLHKGGVLVCIGLTLYGTVLLTDHFYKYFKYVRPQIQASKAAAEQELL 78
           N   D  HK  V   +G  ++ T     +   Y+K+VRP  Q  +   E+EL+
Sbjct: 26  NRRLDIAHKVIVRSILGFLVFSTSYCIINAGIYYKFVRPIRQEERELLERELI 78


>U53155-10|AAC48271.1|  346|Caenorhabditis elegans Seven tm receptor
           protein 139 protein.
          Length = 346

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -1

Query: 200 LVCIGLTLYGTVLLTDHFYKYFKYVRPQ 117
           L C   +L   +L T  FY+Y    RPQ
Sbjct: 92  LFCAAYSLMTALLATQFFYRYIVVCRPQ 119


>Z99288-3|CAB16546.1|  353|Caenorhabditis elegans Hypothetical
           protein ZK262.3 protein.
          Length = 353

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +2

Query: 176 TMSIRCKLIHHPCAAY 223
           T S+RC  + +PCA Y
Sbjct: 70  TFSVRCDFVGNPCAGY 85


>Z70038-1|CAA93884.1| 2219|Caenorhabditis elegans Hypothetical protein
            ZK1067.2 protein.
          Length = 2219

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -2

Query: 127  CGHRYKHPKQLLNKSFCQKVLQRKLCKG 44
            CGHR   P   +N S C +   +KL  G
Sbjct: 1596 CGHRITTPCSRINSSKCDQSCTKKLLCG 1623


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,948,357
Number of Sequences: 27780
Number of extensions: 158209
Number of successful extensions: 363
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 360
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 363
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 440341558
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)