Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc19c14
         (825 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S...    27   4.3  
SPCC830.08c |||Golgi membrane protein |Schizosaccharomyces pombe...    26   5.6  
SPAC29B12.10c |||OPT oligopeptide transporter family|Schizosacch...    26   5.6  
SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c...    23   9.2  

>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 971

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +3

Query: 132 IATIFLNLNFLTVQLYNVMSTAYYLFLILFTVSC 233
           +  IFL LN + +  Y +    + LF+  F+V C
Sbjct: 341 VPVIFLFLNVIGIAAYKLEDPVHRLFVTAFSVCC 374


>SPCC830.08c |||Golgi membrane protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 182

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = +1

Query: 439 FLFY*QYVFNLLLWFLPVFTLSKDVFLV 522
           FL   +Y   L+L+++PV+ L K +FL+
Sbjct: 96  FLNVIEYWSQLILYYVPVYWLLKAIFLI 123


>SPAC29B12.10c |||OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 851

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 281 FLTLFINMF*LNFLTVQYYVVMSRVYYLFLIL 376
           + TLFI +F L   TV+YY     V+ L + L
Sbjct: 536 YATLFIVVFGLTIFTVRYYDTQCPVWALIVAL 567


>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 649

 Score = 22.6 bits (46), Expect(2) = 9.2
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 651 LFLWLFSI*SFAYVFSV 701
           LF W  S+ SF Y+F++
Sbjct: 167 LFGWFVSVDSFLYIFTL 183



 Score = 21.0 bits (42), Expect(2) = 9.2
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +3

Query: 537 KLRDSDILTQCFYNFHCF 590
           +LR S +  Q F+N+ CF
Sbjct: 117 RLRASKLQIQNFWNYICF 134


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,162,753
Number of Sequences: 5004
Number of extensions: 33411
Number of successful extensions: 76
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 404442380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)