Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc19c11
         (927 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.05 |||membrane transporter |Schizosaccharomyces pombe|ch...    31   0.17 
SPAC24C9.08 |||vacuolar carboxypeptidase |Schizosaccharomyces po...    27   5.0  
SPBC12C2.05c |||diacylglycerol binding protein Bzz1 |Schizosacch...    26   6.6  

>SPBC776.05 |||membrane transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 404

 Score = 31.5 bits (68), Expect = 0.17
 Identities = 27/97 (27%), Positives = 41/97 (42%), Gaps = 5/97 (5%)
 Frame = +3

Query: 411 HSVRKFKDLLLYINKIYNLHYLKILCTISY-----PRAISVLLLSD*VISAVCVNSILKR 575
           HS+ K   L ++      LH +  L   SY     P  + V  +   ++S+V + S    
Sbjct: 214 HSIDKITSLFIHFFPPLVLHTIVHLTNKSYLKDRFPAVLKVKKID--LLSSVEIASFFYA 271

Query: 576 LWSIWFYIFCFIEFNSIVRFQTYLYITVNFTWTSNLS 686
           LW IW+Y   FI+     + Q       +FTW S  S
Sbjct: 272 LWQIWYYF--FIQVGKQKQIQEGR--PTSFTWLSKAS 304


>SPAC24C9.08 |||vacuolar carboxypeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 596

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +2

Query: 62  GIS*TYQMYSNYLHELGHQYH 124
           G+   Y  Y   L E GH+YH
Sbjct: 444 GLKQVYDRYGGLLEEFGHEYH 464


>SPBC12C2.05c |||diacylglycerol binding protein Bzz1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -1

Query: 594 KTKYSITFLILNLHKRQK*LNQIIATLK*HVDM 496
           K KY +  L+ N HK QK  N+ + TL  H+ +
Sbjct: 195 KNKYLLRMLVYNAHK-QKFYNETLPTLLNHMQV 226


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,556,919
Number of Sequences: 5004
Number of extensions: 73008
Number of successful extensions: 159
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 469338710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)