Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc19c11
         (927 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0659 + 4946937-4946990,4947579-4947698,4947820-4947918,494...    30   2.3  
12_01_0671 - 5702051-5702159,5702493-5703216,5703910-5704476,570...    29   4.0  
03_05_0514 - 25082662-25082669,25082978-25083043,25083903-250840...    28   9.2  

>07_01_0659 +
           4946937-4946990,4947579-4947698,4947820-4947918,
           4948038-4948175,4948268-4948402,4948501-4948609,
           4948735-4948976,4949061-4949180,4949272-4949391,
           4949477-4949599,4949708-4949812,4949896-4950040,
           4950337-4950501,4950621-4950859,4950939-4950971,
           4951082-4951163,4951314-4951474,4951566-4951751,
           4951877-4952059,4952166-4952347,4952461-4952557
          Length = 945

 Score = 30.3 bits (65), Expect = 2.3
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +2

Query: 482 SVYNFISTCYFSVAII*LSYFCRLCKFNIKKVMEYLVLY 598
           +VYN IS C+    +  +  FC +C   I  V+E +V+Y
Sbjct: 218 TVYNVISICFAVQVLTAIGNFC-ICSIAIGMVVEIIVMY 255


>12_01_0671 - 5702051-5702159,5702493-5703216,5703910-5704476,
            5704654-5704873,5705303-5707207
          Length = 1174

 Score = 29.5 bits (63), Expect = 4.0
 Identities = 16/57 (28%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
 Frame = +3

Query: 327  IQKILYNN*YLICI*-CKLCVFIFLAIE*HSVRKFKDLLLYINKIYNLHYLKILCTI 494
            +Q++L+++  L+C+  C+ CV  F+A E  S+R   +   +++ I N     + CT+
Sbjct: 880  LQQLLFDHGKLVCVRQCEGCVLAFIAFEDSSIRSRAE--RFLSSITNSIETVLRCTV 934


>03_05_0514 -
           25082662-25082669,25082978-25083043,25083903-25084017,
           25084769-25084843,25085285-25085338,25085420-25085471,
           25087308-25087447,25087993-25088077,25088358-25088431,
           25088533-25088616,25088617-25088653,25089569-25089872,
           25090371-25090536,25091053-25091076
          Length = 427

 Score = 28.3 bits (60), Expect = 9.2
 Identities = 14/52 (26%), Positives = 26/52 (50%)
 Frame = +3

Query: 450 NKIYNLHYLKILCTISYPRAISVLLLSD*VISAVCVNSILKRLWSIWFYIFC 605
           N +Y LH+L   C+I +   I  +++ +  +S V   S+ K+ +    Y  C
Sbjct: 128 NPLYPLHFLVDECSIGFSGVIFSMIVIETSLSGVQTRSLTKKCFKCAQYQVC 179


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,534,600
Number of Sequences: 37544
Number of extensions: 340920
Number of successful extensions: 562
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 562
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2647531240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)