Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc19c10
         (871 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce...    62   8e-11
SPAP8A3.06 |||U2AF small subunit, U2AF-23|Schizosaccharomyces po...    38   0.002
SPBC1289.02c |uap2||U2 snRNP-associated protein Uap2|Schizosacch...    35   0.017
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p...    28   2.0  
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces...    27   4.6  
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||...    27   4.6  
SPBC29A10.05 |exo1|mut2|exonuclease I Exo1|Schizosaccharomyces p...    26   6.1  
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ...    26   8.0  
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc...    26   8.0  
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar...    26   8.0  

>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 604

 Score = 62.5 bits (145), Expect = 8e-11
 Identities = 36/87 (41%), Positives = 54/87 (62%), Gaps = 5/87 (5%)
 Frame = -3

Query: 269 SKVVLLRNMVGPGDVD-----EELEPEVKDECNTKYGEVVKVLIFEMPNVPSDEAVRIFV 105
           S+  LL NM  P +       +ELE +VK+EC+ KYG+VV + +  +PN    E  +IFV
Sbjct: 506 SRCALLENMFNPAEETSPNWVQELEQDVKEECDEKYGKVVHIAV--VPN----ELGQIFV 559

Query: 104 EFKRIESAIKAVVDLNGRFFGGRQVKA 24
           +F+  + A KA+  L+ R+FGGR +KA
Sbjct: 560 KFENADFAEKAITGLHQRWFGGRTIKA 586


>SPAP8A3.06 |||U2AF small subunit, U2AF-23|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 216

 Score = 37.5 bits (83), Expect = 0.002
 Identities = 21/54 (38%), Positives = 32/54 (59%)
 Frame = -3

Query: 185 TKYGEVVKVLIFEMPNVPSDEAVRIFVEFKRIESAIKAVVDLNGRFFGGRQVKA 24
           +KYGEV ++++ +  NV       ++V FK  ESA  A+ DLN R++  R V A
Sbjct: 85  SKYGEVEQLVVCD--NVGDHLVGNVYVRFKYEESAQNAIDDLNSRWYSQRPVYA 136


>SPBC1289.02c |uap2||U2 snRNP-associated protein
           Uap2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 367

 Score = 34.7 bits (76), Expect = 0.017
 Identities = 27/91 (29%), Positives = 48/91 (52%), Gaps = 5/91 (5%)
 Frame = -3

Query: 269 SKVVLLRNMVGPGDVDE--ELEPEVKDECNT---KYGEVVKVLIFEMPNVPSDEAVRIFV 105
           +K+V+L+++    ++D+  EL  ++KD+      K G V  V++++       + V + V
Sbjct: 248 NKIVVLKHIFTLEELDKTPELLIDLKDDITEEAEKCGRVTNVVLYDK----EPDGV-VTV 302

Query: 104 EFKRIESAIKAVVDLNGRFFGGRQVKAGFYD 12
            F   E A   V  + GR+F GR V+A  YD
Sbjct: 303 RFSNNEEAEACVRLMQGRYFDGRVVEASIYD 333


>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 19/92 (20%), Positives = 42/92 (45%), Gaps = 6/92 (6%)
 Frame = -3

Query: 272 PSKVVLLRNMV-GPGDVDEELEPEVKDECNTKYGEVVKVLIFEMPNVPSDE-----AVRI 111
           P++V+ L N++ G   +D +   ++ +   T++     ++  ++P             ++
Sbjct: 416 PTRVLQLHNLITGDEIMDVQEYEDIYESVKTQFSNYGPLIDIKIPRSIGTRNSGLGTGKV 475

Query: 110 FVEFKRIESAIKAVVDLNGRFFGGRQVKAGFY 15
           FV +  I SA  A+ ++ G  F  R +   FY
Sbjct: 476 FVRYSDIRSAEVAMEEMKGCKFNDRTIVIAFY 507


>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 609

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 14/56 (25%), Positives = 27/56 (48%)
 Frame = -3

Query: 197 DECNTKYGEVVKVLIFEMPNVPSDEAVRIFVEFKRIESAIKAVVDLNGRFFGGRQV 30
           +E  +K+G +    +   P+    +    FV F     A++A+  LNG  FG +++
Sbjct: 438 EELFSKFGRIKSCTLASYPSTEISKGYG-FVSFSHPFEAVQAINTLNGVLFGKKRL 492


>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1101

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = -3

Query: 194 ECNTKYGEVVKVL--IFEMPNVPSDEAVRIFVEFKRIESAIKAVVDLNGRFF 45
           EC   Y   V+++  I EMP V ++E  RIF   + I   +   +  N R F
Sbjct: 406 ECQHTYVRSVEIIKNIAEMPTVDAEERSRIFAGLQHIIPDLAPNMISNSRNF 457


>SPBC29A10.05 |exo1|mut2|exonuclease I Exo1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 571

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 8/26 (30%), Positives = 18/26 (69%)
 Frame = +1

Query: 37  LPPKKRPLRSTTALIALSIRLNSTNI 114
           +PP KRP +ST+ +   ++++  T++
Sbjct: 370 IPPSKRPTKSTSLIDVTNVKVQRTHL 395


>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 625

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = -2

Query: 468 RNVGGLASREDFKTRWSNYS 409
           RN+G L+  +D K++++NYS
Sbjct: 120 RNIGSLSVLDDTKSQYANYS 139


>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
           4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 636

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 10/42 (23%), Positives = 18/42 (42%)
 Frame = -3

Query: 386 PPPGFTMQAPAGPDXXXXXXXXXXXSRNEPSITEIMKTPSKV 261
           PPP  + Q P+ P+               PS+  + +TP+ +
Sbjct: 34  PPPPSSQQPPSTPNGKEAASPSALKQNVRPSLNSVQQTPASI 75


>SPAC57A7.04c |pabp||mRNA export shuttling protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 653

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 17/74 (22%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
 Frame = -3

Query: 230 DVDEELEPEVKDECNTKYGEVV--KVLIFEMPNVPSDEAVRIFVEFKRIESAIKAVVDLN 57
           ++D  ++ +   +  + +G+++  KV + E+ N         FV F  +ESA  A+  +N
Sbjct: 174 NLDPAIDNKALHDTFSAFGKILSCKVAVDELGNAKGYG----FVHFDSVESANAAIEHVN 229

Query: 56  GRFFGGRQVKAGFY 15
           G     ++V  G +
Sbjct: 230 GMLLNDKKVYVGHH 243


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,074,189
Number of Sequences: 5004
Number of extensions: 55910
Number of successful extensions: 180
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)