Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc19c10
(871 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna... 79 4e-15
Z73427-7|CAA97799.1| 371|Caenorhabditis elegans Hypothetical pr... 71 1e-12
U79157-1|AAC26982.1| 496|Caenorhabditis elegans splicing factor... 47 2e-05
AC024875-4|AAK29990.1| 143|Caenorhabditis elegans U2af splicing... 47 2e-05
AC024875-3|AAK29989.1| 496|Caenorhabditis elegans U2af splicing... 47 2e-05
AC024875-2|AAM44400.1| 471|Caenorhabditis elegans U2af splicing... 47 2e-05
AC024875-1|AAL00879.1| 474|Caenorhabditis elegans U2af splicing... 47 2e-05
AL117204-23|CAB55137.1| 285|Caenorhabditis elegans Hypothetical... 41 0.001
U42436-5|AAF99894.2| 796|Caenorhabditis elegans Not-like (yeast... 38 0.007
Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical pr... 35 0.066
AC090999-21|AAK26150.1| 530|Caenorhabditis elegans Hypothetical... 33 0.35
AC024844-6|AAK29956.1| 442|Caenorhabditis elegans Hypothetical ... 31 1.1
U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical pr... 31 1.4
U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical pr... 31 1.4
U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical pr... 31 1.4
U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical pr... 31 1.4
U42847-1|AAA83603.2| 146|Caenorhabditis elegans Hypothetical pr... 29 3.3
AC024826-10|AAM97977.1| 435|Caenorhabditis elegans Hypothetical... 29 4.3
AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical ... 29 4.3
AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna... 29 5.7
AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna... 29 5.7
Z99273-1|CAB16477.1| 645|Caenorhabditis elegans Hypothetical pr... 28 7.5
Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical pr... 28 7.5
AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical ... 28 7.5
U00051-6|AAK70644.1| 259|Caenorhabditis elegans Hypothetical pr... 28 10.0
>AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform b protein.
Length = 749
Score = 79.0 bits (186), Expect = 4e-15
Identities = 44/95 (46%), Positives = 61/95 (64%), Gaps = 1/95 (1%)
Frame = -3
Query: 293 ITEIMKTP-SKVVLLRNMVGPGDVDEELEPEVKDECNTKYGEVVKVLIFEMPNVPSDEAV 117
+T++M+T S V++LRNMV P D+DE LE E+++EC KYG V+ V+I N S V
Sbjct: 648 MTKLMRTNRSNVIVLRNMVTPQDIDEFLEGEIREECG-KYGNVIDVVI---ANFASSGLV 703
Query: 116 RIFVEFKRIESAIKAVVDLNGRFFGGRQVKAGFYD 12
+IFV++ +A L+GRFFGG VKA YD
Sbjct: 704 KIFVKYSDSMQVDRAKAALDGRFFGGNTVKAEAYD 738
Score = 28.7 bits (61), Expect = 5.7
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = -3
Query: 110 FVEFKRIESAIKAVVDLNGRFFGGRQVK 27
FVE++ E+A+ A +NG+ GGR +K
Sbjct: 147 FVEYEVPEAALLAQESMNGQMLGGRNLK 174
>Z73427-7|CAA97799.1| 371|Caenorhabditis elegans Hypothetical
protein F58B3.7 protein.
Length = 371
Score = 70.9 bits (166), Expect = 1e-12
Identities = 59/180 (32%), Positives = 82/180 (45%), Gaps = 5/180 (2%)
Frame = -3
Query: 533 VAAKIMAKYXXXXXXXXXXXXXGMSVALQVEKTSKRGGRIIHEKDNNVMPPPGFTMQAPA 354
+AA IM ++ GMS AL +EKT RGG I+ E AP
Sbjct: 212 IAANIMKRHGYKEGAGLGKSEQGMSTALSIEKTGVRGGNIVAE--------------APK 257
Query: 353 GPDXXXXXXXXXXXSRNEPSITEIMKTPSKVVLLRNMVGPGDVD-----EELEPEVKDEC 189
P + E ++ +K++ L N+ +V +E E+K+E
Sbjct: 258 APTFAT-------------NSMEAVQNATKILQLWNLTDLSEVSGEEGKKEFADEIKEEM 304
Query: 188 NTKYGEVVKVLIFEMPNVPSDEAVRIFVEFKRIESAIKAVVDLNGRFFGGRQVKAGFYDV 9
K G+VV V++ + D VR+FVEF AIKA V +NGRFFGGR V AGF +V
Sbjct: 305 E-KCGQVVNVIVHVDESQEEDRQVRVFVEFTNNAQAIKAFVMMNGRFFGGRSVSAGFQNV 363
Score = 27.9 bits (59), Expect = 10.0
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = -2
Query: 861 YDPMWPNDYEKVAKELQAKE 802
Y PM PN+YE VAKE+ ++
Sbjct: 114 YYPMTPNNYEVVAKEINDRK 133
>U79157-1|AAC26982.1| 496|Caenorhabditis elegans splicing factor
U2AF65 protein.
Length = 496
Score = 46.8 bits (106), Expect = 2e-05
Identities = 34/98 (34%), Positives = 52/98 (53%), Gaps = 9/98 (9%)
Frame = -3
Query: 269 SKVVLLRNMVGPGDVD-----EELEPEVKDECNTKYGEVVKVLIFEMPNVPSDEAV---- 117
++++ L NMV ++ EE+ +V+DEC+ KYG +V+ L E+P D V
Sbjct: 397 TEILCLMNMVTEDELKADDEYEEILEDVRDECS-KYG-IVRSL--EIPRPYEDHPVPGVG 452
Query: 116 RIFVEFKRIESAIKAVVDLNGRFFGGRQVKAGFYDVEK 3
++FVEF +A L GR F R V +YDV+K
Sbjct: 453 KVFVEFASTSDCQRAQAALTGRKFANRTVVTSYYDVDK 490
>AC024875-4|AAK29990.1| 143|Caenorhabditis elegans U2af splicing
factor protein 1,isoform b protein.
Length = 143
Score = 46.8 bits (106), Expect = 2e-05
Identities = 34/98 (34%), Positives = 52/98 (53%), Gaps = 9/98 (9%)
Frame = -3
Query: 269 SKVVLLRNMVGPGDVD-----EELEPEVKDECNTKYGEVVKVLIFEMPNVPSDEAV---- 117
++++ L NMV ++ EE+ +V+DEC+ KYG +V+ L E+P D V
Sbjct: 44 TEILCLMNMVTEDELKADDEYEEILEDVRDECS-KYG-IVRSL--EIPRPYEDHPVPGVG 99
Query: 116 RIFVEFKRIESAIKAVVDLNGRFFGGRQVKAGFYDVEK 3
++FVEF +A L GR F R V +YDV+K
Sbjct: 100 KVFVEFASTSDCQRAQAALTGRKFANRTVVTSYYDVDK 137
>AC024875-3|AAK29989.1| 496|Caenorhabditis elegans U2af splicing
factor protein 1,isoform a protein.
Length = 496
Score = 46.8 bits (106), Expect = 2e-05
Identities = 34/98 (34%), Positives = 52/98 (53%), Gaps = 9/98 (9%)
Frame = -3
Query: 269 SKVVLLRNMVGPGDVD-----EELEPEVKDECNTKYGEVVKVLIFEMPNVPSDEAV---- 117
++++ L NMV ++ EE+ +V+DEC+ KYG +V+ L E+P D V
Sbjct: 397 TEILCLMNMVTEDELKADDEYEEILEDVRDECS-KYG-IVRSL--EIPRPYEDHPVPGVG 452
Query: 116 RIFVEFKRIESAIKAVVDLNGRFFGGRQVKAGFYDVEK 3
++FVEF +A L GR F R V +YDV+K
Sbjct: 453 KVFVEFASTSDCQRAQAALTGRKFANRTVVTSYYDVDK 490
>AC024875-2|AAM44400.1| 471|Caenorhabditis elegans U2af splicing
factor protein 1,isoform d protein.
Length = 471
Score = 46.8 bits (106), Expect = 2e-05
Identities = 34/98 (34%), Positives = 52/98 (53%), Gaps = 9/98 (9%)
Frame = -3
Query: 269 SKVVLLRNMVGPGDVD-----EELEPEVKDECNTKYGEVVKVLIFEMPNVPSDEAV---- 117
++++ L NMV ++ EE+ +V+DEC+ KYG +V+ L E+P D V
Sbjct: 372 TEILCLMNMVTEDELKADDEYEEILEDVRDECS-KYG-IVRSL--EIPRPYEDHPVPGVG 427
Query: 116 RIFVEFKRIESAIKAVVDLNGRFFGGRQVKAGFYDVEK 3
++FVEF +A L GR F R V +YDV+K
Sbjct: 428 KVFVEFASTSDCQRAQAALTGRKFANRTVVTSYYDVDK 465
>AC024875-1|AAL00879.1| 474|Caenorhabditis elegans U2af splicing
factor protein 1,isoform c protein.
Length = 474
Score = 46.8 bits (106), Expect = 2e-05
Identities = 34/98 (34%), Positives = 52/98 (53%), Gaps = 9/98 (9%)
Frame = -3
Query: 269 SKVVLLRNMVGPGDVD-----EELEPEVKDECNTKYGEVVKVLIFEMPNVPSDEAV---- 117
++++ L NMV ++ EE+ +V+DEC+ KYG +V+ L E+P D V
Sbjct: 375 TEILCLMNMVTEDELKADDEYEEILEDVRDECS-KYG-IVRSL--EIPRPYEDHPVPGVG 430
Query: 116 RIFVEFKRIESAIKAVVDLNGRFFGGRQVKAGFYDVEK 3
++FVEF +A L GR F R V +YDV+K
Sbjct: 431 KVFVEFASTSDCQRAQAALTGRKFANRTVVTSYYDVDK 468
>AL117204-23|CAB55137.1| 285|Caenorhabditis elegans Hypothetical
protein Y116A8C.35 protein.
Length = 285
Score = 40.7 bits (91), Expect = 0.001
Identities = 23/66 (34%), Positives = 36/66 (54%)
Frame = -3
Query: 221 EELEPEVKDECNTKYGEVVKVLIFEMPNVPSDEAVRIFVEFKRIESAIKAVVDLNGRFFG 42
++ EV E KYGEV ++ + E N+ ++V+F + E A KA DLN R+F
Sbjct: 88 DDFYEEVFVEMERKYGEVEEINVCE--NIGEHMVGNVYVKFMKEEDAEKAKNDLNNRWFN 145
Query: 41 GRQVKA 24
G+ + A
Sbjct: 146 GQPIYA 151
>U42436-5|AAF99894.2| 796|Caenorhabditis elegans Not-like (yeast
ccr4/not complexcomponent) protein 4, isoform a protein.
Length = 796
Score = 38.3 bits (85), Expect = 0.007
Identities = 23/85 (27%), Positives = 48/85 (56%), Gaps = 6/85 (7%)
Frame = -3
Query: 260 VLLRNMVGPGDVDEEL-EPEV--KDECNTKYGEVVKVLIFEMPNVPSDE---AVRIFVEF 99
VL +N+V + + +PE+ K+E +YG++ K++ P++P+ + +V +
Sbjct: 104 VLQKNLVYVVGLSPRVADPEILKKNEYFGRYGKIQKIVTSATPSLPAPHLPPSHTAYVTY 163
Query: 98 KRIESAIKAVVDLNGRFFGGRQVKA 24
KR++ A++A+ ++ GR VKA
Sbjct: 164 KRVDDALRAIQGVHNSMLDGRLVKA 188
>Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical
protein C07A4.1 protein.
Length = 360
Score = 35.1 bits (77), Expect = 0.066
Identities = 18/72 (25%), Positives = 35/72 (48%)
Frame = -3
Query: 233 GDVDEELEPEVKDECNTKYGEVVKVLIFEMPNVPSDEAVRIFVEFKRIESAIKAVVDLNG 54
GD+ +++ E+ TK+GEV + + + FV F ++A A+ +NG
Sbjct: 140 GDLSKDVSNELLKSTFTKFGEVSEAKVIRDVQTQKSKGYG-FVSFPNKQNAENAIAGMNG 198
Query: 53 RFFGGRQVKAGF 18
++ G R V+ +
Sbjct: 199 KWIGKRAVRTNW 210
Score = 34.3 bits (75), Expect = 0.11
Identities = 19/73 (26%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Frame = -3
Query: 233 GDVDEEL-EPEVKDECNTKYGEVVKVLIFEMPNVPSDEAVRIFVEFKRIESAIKAVVDLN 57
G++ ++ + +++D +T YG++ +V IF+ FV +++ E A KA++++N
Sbjct: 242 GNISQQTTDADLRDLFST-YGDIAEVRIFKTQRYA-------FVRYEKKECATKAIMEMN 293
Query: 56 GRFFGGRQVKAGF 18
G+ G QV+ +
Sbjct: 294 GKEMAGNQVRCSW 306
>AC090999-21|AAK26150.1| 530|Caenorhabditis elegans Hypothetical
protein Y82E9BR.2 protein.
Length = 530
Score = 32.7 bits (71), Expect = 0.35
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = -3
Query: 113 IFVEFKRIESAIKAVVDLNGRFFGGRQVKAGFYDVEK 3
+FVEF +A L GR F R V +YDV+K
Sbjct: 488 VFVEFASTSDCQRAQAALTGRKFANRTVVTSYYDVDK 524
>AC024844-6|AAK29956.1| 442|Caenorhabditis elegans Hypothetical
protein Y65B4A.1 protein.
Length = 442
Score = 31.1 bits (67), Expect = 1.1
Identities = 23/69 (33%), Positives = 35/69 (50%)
Frame = -3
Query: 218 ELEPEVKDECNTKYGEVVKVLIFEMPNVPSDEAVRIFVEFKRIESAIKAVVDLNGRFFGG 39
+L+ E+ C KYG V KV+++ N P + V F E + AV L+GR G
Sbjct: 333 DLKEEMTQSCQ-KYGIVKKVVVYA--NHPDGV---VSVTFPTTEESDMAVKYLHGRVVDG 386
Query: 38 RQVKAGFYD 12
R++ A +D
Sbjct: 387 RKLTAELWD 395
>U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical
protein C18A3.5f protein.
Length = 295
Score = 30.7 bits (66), Expect = 1.4
Identities = 19/72 (26%), Positives = 36/72 (50%)
Frame = -3
Query: 233 GDVDEELEPEVKDECNTKYGEVVKVLIFEMPNVPSDEAVRIFVEFKRIESAIKAVVDLNG 54
G++ E E++ +G + +V IF+M FV+F ++A KA+V +N
Sbjct: 133 GNIASLTEDEIRQGF-ASFGRITEVRIFKMQGYA-------FVKFDNKDAAAKAIVQMNN 184
Query: 53 RFFGGRQVKAGF 18
+ GG+ V+ +
Sbjct: 185 QDVGGQLVRCSW 196
>U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical
protein C18A3.5e protein.
Length = 305
Score = 30.7 bits (66), Expect = 1.4
Identities = 19/72 (26%), Positives = 36/72 (50%)
Frame = -3
Query: 233 GDVDEELEPEVKDECNTKYGEVVKVLIFEMPNVPSDEAVRIFVEFKRIESAIKAVVDLNG 54
G++ E E++ +G + +V IF+M FV+F ++A KA+V +N
Sbjct: 143 GNIASLTEDEIRQGF-ASFGRITEVRIFKMQGYA-------FVKFDNKDAAAKAIVQMNN 194
Query: 53 RFFGGRQVKAGF 18
+ GG+ V+ +
Sbjct: 195 QDVGGQLVRCSW 206
>U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical
protein C18A3.5a protein.
Length = 408
Score = 30.7 bits (66), Expect = 1.4
Identities = 19/72 (26%), Positives = 36/72 (50%)
Frame = -3
Query: 233 GDVDEELEPEVKDECNTKYGEVVKVLIFEMPNVPSDEAVRIFVEFKRIESAIKAVVDLNG 54
G++ E E++ +G + +V IF+M FV+F ++A KA+V +N
Sbjct: 246 GNIASLTEDEIRQGF-ASFGRITEVRIFKMQGYA-------FVKFDNKDAAAKAIVQMNN 297
Query: 53 RFFGGRQVKAGF 18
+ GG+ V+ +
Sbjct: 298 QDVGGQLVRCSW 309
>U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical
protein C18A3.5b protein.
Length = 376
Score = 30.7 bits (66), Expect = 1.4
Identities = 19/72 (26%), Positives = 36/72 (50%)
Frame = -3
Query: 233 GDVDEELEPEVKDECNTKYGEVVKVLIFEMPNVPSDEAVRIFVEFKRIESAIKAVVDLNG 54
G++ E E++ +G + +V IF+M FV+F ++A KA+V +N
Sbjct: 214 GNIASLTEDEIRQGF-ASFGRITEVRIFKMQGYA-------FVKFDNKDAAAKAIVQMNN 265
Query: 53 RFFGGRQVKAGF 18
+ GG+ V+ +
Sbjct: 266 QDVGGQLVRCSW 277
>U42847-1|AAA83603.2| 146|Caenorhabditis elegans Hypothetical
protein F39H12.2 protein.
Length = 146
Score = 29.5 bits (63), Expect = 3.3
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +1
Query: 82 ALSIRLNSTNILTASSDGTFGISKMSTLTTSPYFV 186
++S+ S +LT+S DGTF +SK+ T Y V
Sbjct: 62 SVSVAPESAYVLTSSEDGTFIVSKLHTRKPHAYQV 96
>AC024826-10|AAM97977.1| 435|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3c protein.
Length = 435
Score = 29.1 bits (62), Expect = 4.3
Identities = 24/99 (24%), Positives = 46/99 (46%), Gaps = 5/99 (5%)
Frame = -3
Query: 290 TEIMKTPSKVVLLRNMVGPGDV-----DEELEPEVKDECNTKYGEVVKVLIFEMPNVPSD 126
++I ++ LL NM P D ++ +V ++C +G + V + +
Sbjct: 269 SQIPSIATQCFLLSNMFDPSKETEPAWDHDIREDVIEQC-LAHGGALHVFVDK-----GS 322
Query: 125 EAVRIFVEFKRIESAIKAVVDLNGRFFGGRQVKAGFYDV 9
E ++V+ I A +AV L+GR+F G+ + A + V
Sbjct: 323 EQGNVYVKCPSIVIAHQAVSALHGRWFSGKVITANYVPV 361
>AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3a protein.
Length = 580
Score = 29.1 bits (62), Expect = 4.3
Identities = 24/99 (24%), Positives = 46/99 (46%), Gaps = 5/99 (5%)
Frame = -3
Query: 290 TEIMKTPSKVVLLRNMVGPGDV-----DEELEPEVKDECNTKYGEVVKVLIFEMPNVPSD 126
++I ++ LL NM P D ++ +V ++C +G + V + +
Sbjct: 414 SQIPSIATQCFLLSNMFDPSKETEPAWDHDIREDVIEQC-LAHGGALHVFVDK-----GS 467
Query: 125 EAVRIFVEFKRIESAIKAVVDLNGRFFGGRQVKAGFYDV 9
E ++V+ I A +AV L+GR+F G+ + A + V
Sbjct: 468 EQGNVYVKCPSIVIAHQAVSALHGRWFSGKVITANYVPV 506
>AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform c protein.
Length = 346
Score = 28.7 bits (61), Expect = 5.7
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = -3
Query: 110 FVEFKRIESAIKAVVDLNGRFFGGRQVK 27
FVE++ E+A+ A +NG+ GGR +K
Sbjct: 147 FVEYEVPEAALLAQESMNGQMLGGRNLK 174
>AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform a protein.
Length = 339
Score = 28.7 bits (61), Expect = 5.7
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = -3
Query: 110 FVEFKRIESAIKAVVDLNGRFFGGRQVK 27
FVE++ E+A+ A +NG+ GGR +K
Sbjct: 147 FVEYEVPEAALLAQESMNGQMLGGRNLK 174
>Z99273-1|CAB16477.1| 645|Caenorhabditis elegans Hypothetical
protein Y45F10C.1 protein.
Length = 645
Score = 28.3 bits (60), Expect = 7.5
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -3
Query: 149 EMPNVPSDEAVRIFVEFKRIESAIKAVVDLNGRFFG 42
E N P D+ R+F EF+ +E + V GRF G
Sbjct: 264 EKSNEPIDQR-RVFGEFRALEHGVLDVTTYRGRFHG 298
>Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical
protein R06C1.4 protein.
Length = 84
Score = 28.3 bits (60), Expect = 7.5
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -3
Query: 110 FVEFKRIESAIKAVVDLNGRFFGGRQVKAGF 18
FVEF A +AV LNG F GR ++ +
Sbjct: 51 FVEFSEEAGAQRAVEQLNGVAFNGRNLRVNY 81
>AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical
protein Y46G5A.13 protein.
Length = 434
Score = 28.3 bits (60), Expect = 7.5
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = -3
Query: 110 FVEFKRIESAIKAVVDLNGRFFGGRQVKAGF 18
FV+F+ ESA +A+V +N GG+ V+ +
Sbjct: 294 FVKFETKESAARAIVQMNNADIGGQIVRCSW 324
>U00051-6|AAK70644.1| 259|Caenorhabditis elegans Hypothetical
protein F42G9.8 protein.
Length = 259
Score = 27.9 bits (59), Expect = 10.0
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 8/64 (12%)
Frame = -3
Query: 194 ECNTKYGEVVKVLIFEMPNVPSDEAVRI--FVEFK------RIESAIKAVVDLNGRFFGG 39
+CN G+ +KV + P++E +RI F++ R + I VDLN + F
Sbjct: 136 QCNNAPGQCIKVYYERLIQKPAEEILRITNFLDLPFSQQMLRHQDLIGDEVDLNDQEFSA 195
Query: 38 RQVK 27
QVK
Sbjct: 196 SQVK 199
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,390,624
Number of Sequences: 27780
Number of extensions: 336983
Number of successful extensions: 1114
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1062
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1113
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2181923744
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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