Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc19c08
         (762 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1209 - 9738501-9738516,9738703-9739161,9739389-9739608,973...    30   2.3  
05_01_0311 + 2452230-2452232,2452401-2452809,2454136-2454263,245...    28   9.3  
04_01_0487 + 6406826-6407086,6413538-6413996,6414401-6414570,641...    28   9.3  
03_02_0913 + 12344096-12344125,12344284-12345970,12346243-123465...    28   9.3  
03_02_0859 - 11853928-11854138,11854225-11854683,11854760-118549...    28   9.3  
01_05_0782 - 25148733-25149166,25149252-25149415,25149636-251496...    28   9.3  

>01_01_1209 - 9738501-9738516,9738703-9739161,9739389-9739608,
            9739708-9739831,9739927-9740635,9741826-9742132,
            9742213-9743704
          Length = 1108

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +1

Query: 271  LVGIEHRWNYQIYKISILYQFIKNKKFV 354
            L+ +   WNYQ     ILY F KN  FV
Sbjct: 919  LLLVHGHWNYQRMSYMILYNFYKNATFV 946


>05_01_0311 +
           2452230-2452232,2452401-2452809,2454136-2454263,
           2455287-2455436,2455526-2455681,2455775-2455986,
           2456306-2456407,2456517-2456653,2456769-2457055
          Length = 527

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 19/62 (30%), Positives = 29/62 (46%)
 Frame = +1

Query: 181 LKHISLQIQRRIKKYIYVFSNLKII*HFHCLVGIEHRWNYQIYKISILYQFIKNKKFVHS 360
           +KHI L   RR  K IYV   L      H ++        + Y+   LYQ ++  K++H+
Sbjct: 80  IKHILLPPSRREFKDIYVVFELMES-DLHQVIKANDDLTPEHYQF-FLYQLLRGLKYIHT 137

Query: 361 TN 366
            N
Sbjct: 138 AN 139


>04_01_0487 +
           6406826-6407086,6413538-6413996,6414401-6414570,
           6415146-6415175,6415777-6415939,6416020-6417132
          Length = 731

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +3

Query: 483 WSIKE*ESNRHTYSEID*KSICIIRSCKFLD*FLH 587
           W I   E N+  Y EI   S+C + +C   D  +H
Sbjct: 507 WDIDRLEGNKVRYKEIIASSLCKLEACNLHDLSIH 541


>03_02_0913 + 12344096-12344125,12344284-12345970,12346243-12346573,
            12346712-12347567,12347760-12347883,12348469-12348688,
            12348771-12349229,12349318-12349519
          Length = 1302

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +1

Query: 271  LVGIEHRWNYQIYKISILYQFIKNKKFV 354
            L+ +   WNYQ     ILY F +N  FV
Sbjct: 1051 LLLVHGHWNYQRIAYMILYNFYRNAVFV 1078


>03_02_0859 -
           11853928-11854138,11854225-11854683,11854760-11854991,
           11855064-11855187,11855276-11855960,11856429-11856735,
           11856832-11858188
          Length = 1124

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +1

Query: 271 LVGIEHRWNYQIYKISILYQFIKNKKFV 354
           L+ +   WNYQ     ILY F +N  FV
Sbjct: 870 LLLVHGHWNYQRMGYMILYNFYRNATFV 897


>01_05_0782 -
           25148733-25149166,25149252-25149415,25149636-25149664,
           25150049-25150109,25150264-25150475,25150587-25150742,
           25150837-25150986,25151486-25151545,25151653-25151780,
           25152399-25152807,25153087-25153106,25153916-25154048
          Length = 651

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 19/62 (30%), Positives = 29/62 (46%)
 Frame = +1

Query: 181 LKHISLQIQRRIKKYIYVFSNLKII*HFHCLVGIEHRWNYQIYKISILYQFIKNKKFVHS 360
           +KHI L   RR  K IYV   L      H ++        + Y+   LYQ ++  K++H+
Sbjct: 130 IKHIMLPPSRRDFKDIYVVFELMES-DLHQVIKANDDLTKEHYQF-FLYQLLRALKYIHT 187

Query: 361 TN 366
            N
Sbjct: 188 AN 189


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,531,349
Number of Sequences: 37544
Number of extensions: 305397
Number of successful extensions: 461
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 461
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)