Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc19c08
         (762 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93374-2|CAB07553.2|  348|Caenorhabditis elegans Hypothetical pr...    29   2.7  
Z71178-12|CAD44086.1|  342|Caenorhabditis elegans Hypothetical p...    29   3.6  
Z70750-12|CAA94748.2|  363|Caenorhabditis elegans Hypothetical p...    29   4.8  
AF323969-1|AAK50396.1|  363|Caenorhabditis elegans GDP-fucose tr...    29   4.8  
AF016424-5|AAB65326.1|  282|Caenorhabditis elegans Hypothetical ...    28   8.3  

>Z93374-2|CAB07553.2|  348|Caenorhabditis elegans Hypothetical
           protein C06C6.3 protein.
          Length = 348

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = +1

Query: 88  MIYNNKF*VFFVCINLLTIP 147
           MIY + F +FF C+ LLTIP
Sbjct: 47  MIYISTFEIFFGCVELLTIP 66


>Z71178-12|CAD44086.1|  342|Caenorhabditis elegans Hypothetical
           protein B0024.15 protein.
          Length = 342

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = -1

Query: 696 RRCSRI*WITNNNSYENCMGSTRLRYTVSKNTNRWCNARINQEICK 559
           R+  R  W   NNS        R+ + +SK +N + N  + +EI K
Sbjct: 99  RQAIRETWANPNNSEHVANNDVRISFIISKTSNEFLNFALQKEIEK 144


>Z70750-12|CAA94748.2|  363|Caenorhabditis elegans Hypothetical
           protein C50F4.14 protein.
          Length = 363

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 14/76 (18%), Positives = 36/76 (47%)
 Frame = +3

Query: 222 IYICFF*SKDNLTFSLFSWNRAPLELSNL*NIHPVPIY*K*KICTFNQRIDYLRMTYFYF 401
           +++C F SK +  + LF +   P++      + P+ +     I   N  + Y+ ++++Y 
Sbjct: 72  VFLCLFLSKTSKAYGLFKFPSMPIDAKISREVLPLSVVFVAMISFNNLCLKYVGVSFYYV 131

Query: 402 LEKYKISFLL*CSHVL 449
                  F + C++++
Sbjct: 132 GRSLTTVFNVVCTYLI 147


>AF323969-1|AAK50396.1|  363|Caenorhabditis elegans GDP-fucose
           transporter protein.
          Length = 363

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 14/76 (18%), Positives = 36/76 (47%)
 Frame = +3

Query: 222 IYICFF*SKDNLTFSLFSWNRAPLELSNL*NIHPVPIY*K*KICTFNQRIDYLRMTYFYF 401
           +++C F SK +  + LF +   P++      + P+ +     I   N  + Y+ ++++Y 
Sbjct: 72  VFLCLFLSKTSKAYGLFKFPSMPIDAKISREVLPLSVVFVAMISFNNLCLKYVGVSFYYV 131

Query: 402 LEKYKISFLL*CSHVL 449
                  F + C++++
Sbjct: 132 GRSLTTVFNVVCTYLI 147


>AF016424-5|AAB65326.1|  282|Caenorhabditis elegans Hypothetical
           protein F39G3.4 protein.
          Length = 282

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = +1

Query: 571 LINSCITPSV-SIL*YSVSQASRAHTV-FVTIVIRNPLYTTTSSSISWP 711
           L+NS I+  + S L Y    AS  H V F+T+ +    + T  + I WP
Sbjct: 29  LLNSFISTKIMSSLGYFEFAASVTHLVGFITVCLNGYFFNTFYNGIGWP 77


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,914,689
Number of Sequences: 27780
Number of extensions: 333653
Number of successful extensions: 606
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 606
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)