Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc19c07
(255 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 25 1.6
SPCC1620.13 |||phosphoglycerate mutase family|Schizosaccharomyce... 25 1.6
SPBP4G3.03 |||PI31 proteasome regulator related|Schizosaccharomy... 24 2.8
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom... 24 3.7
SPCC1739.05 |set5||histone lysine methyltransferase Set5 |Schizo... 24 3.7
SPAC24B11.14 ||SPAC806.10|sequence orphan|Schizosaccharomyces po... 23 4.9
SPBC8D2.13 |||SHQ1 family protein|Schizosaccharomyces pombe|chr ... 23 4.9
SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 23 4.9
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc... 23 6.4
SPBC19G7.04 |||HMG box protein |Schizosaccharomyces pombe|chr 2|... 23 6.4
SPAC6G9.15c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 23 6.4
SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces pombe... 23 6.4
SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces po... 23 6.4
SPAPB2B4.01c |gpi12||pig-L|Schizosaccharomyces pombe|chr 1|||Manual 23 6.4
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S... 23 8.5
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||... 23 8.5
SPCC338.02 |mug112||sequence orphan|Schizosaccharomyces pombe|ch... 23 8.5
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 25.0 bits (52), Expect = 1.6
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = -2
Query: 107 LQKHLYVELSIIILT*HLKHTAWLQSIEVTNEE 9
L+KH +E I + K+ W QSIE++ ++
Sbjct: 1494 LEKHSLLEFRRIAAYIYRKNKRWTQSIELSKQD 1526
>SPCC1620.13 |||phosphoglycerate mutase family|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 282
Score = 25.0 bits (52), Expect = 1.6
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -3
Query: 49 TQHGYNQSKSQTKNLR 2
T HGYNQ+K K++R
Sbjct: 82 TVHGYNQAKKLAKSIR 97
>SPBP4G3.03 |||PI31 proteasome regulator related|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 241
Score = 24.2 bits (50), Expect = 2.8
Identities = 9/33 (27%), Positives = 18/33 (54%)
Frame = -1
Query: 111 SAAKTFVRRIVHNYPDITFETHSMVTINRSHKR 13
SA +F + + PD+T + ++T + HK+
Sbjct: 83 SATTSFQQGQIETKPDLTLFINELLTTKKEHKK 115
>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1016
Score = 23.8 bits (49), Expect = 3.7
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = +1
Query: 28 IDCNHAVCFKCYVRIIMDNSTYKCFCSASSSDFRVYNK 141
IDC++ KCY +++ KC +S S Y K
Sbjct: 435 IDCHYTCHKKCYPKVVT-----KCISKSSDSASSEYEK 467
>SPCC1739.05 |set5||histone lysine methyltransferase Set5
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 319
Score = 23.8 bits (49), Expect = 3.7
Identities = 8/25 (32%), Positives = 16/25 (64%)
Frame = +1
Query: 67 RIIMDNSTYKCFCSASSSDFRVYNK 141
+I++++ +KC+CS S + R K
Sbjct: 152 KILLEHFGFKCYCSVCSVEERKIRK 176
>SPAC24B11.14 ||SPAC806.10|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 166
Score = 23.4 bits (48), Expect = 4.9
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -1
Query: 78 HNYPDITFETHSMVTINR 25
+NY + F THS V +NR
Sbjct: 91 YNYISLYFVTHSKVPLNR 108
>SPBC8D2.13 |||SHQ1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 451
Score = 23.4 bits (48), Expect = 4.9
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +2
Query: 95 NVFAALVHQIFACTIS 142
NV AAL +Q+ CTI+
Sbjct: 405 NVLAALAYQVSECTIT 420
>SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 673
Score = 23.4 bits (48), Expect = 4.9
Identities = 6/14 (42%), Positives = 8/14 (57%)
Frame = +1
Query: 34 CNHAVCFKCYVRII 75
C H CF C +R +
Sbjct: 230 CGHVYCFSCLLRFV 243
>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1958
Score = 23.0 bits (47), Expect = 6.4
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = +1
Query: 25 SIDCNHAVCFKCY 63
S+D N A+C KC+
Sbjct: 113 SVDSNSALCVKCF 125
>SPBC19G7.04 |||HMG box protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 362
Score = 23.0 bits (47), Expect = 6.4
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = +1
Query: 40 HAVCFKCYVRIIMDNSTY 93
H CFK + + IM+N Y
Sbjct: 230 HGACFKAWGKRIMNNMPY 247
>SPAC6G9.15c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 498
Score = 23.0 bits (47), Expect = 6.4
Identities = 10/35 (28%), Positives = 14/35 (40%)
Frame = +1
Query: 31 DCNHAVCFKCYVRIIMDNSTYKCFCSASSSDFRVY 135
+ NHA K Y+R++ K C F Y
Sbjct: 253 EVNHASLKKTYMRLLNSGKMQKKECDKKGKFFEAY 287
>SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 727
Score = 23.0 bits (47), Expect = 6.4
Identities = 10/34 (29%), Positives = 14/34 (41%)
Frame = +1
Query: 19 VTSIDCNHAVCFKCYVRIIMDNSTYKCFCSASSS 120
V S+ C H CF + M+ T C +S
Sbjct: 316 VRSVFCKHIQCFDASAFLEMNKQTPSWMCPVCAS 349
>SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 875
Score = 23.0 bits (47), Expect = 6.4
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -1
Query: 213 LTPMLFDGIPVTNEG*GHKFYIPVL 139
L M+F+ +P +EG KF I +L
Sbjct: 745 LANMIFESLPNASEGKERKFMISLL 769
>SPAPB2B4.01c |gpi12||pig-L|Schizosaccharomyces pombe|chr 1|||Manual
Length = 248
Score = 23.0 bits (47), Expect = 6.4
Identities = 13/50 (26%), Positives = 27/50 (54%)
Frame = +1
Query: 37 NHAVCFKCYVRIIMDNSTYKCFCSASSSDFRVYNKHGYVEFMPLTLIRNR 186
NH C++ ++I+ + F S + FR Y Y++ +P TL++++
Sbjct: 148 NHIACYEGAMKIVKATPQVQVFVLESVNIFRKY--ISYLDTIP-TLVQSQ 194
>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1842
Score = 22.6 bits (46), Expect = 8.5
Identities = 8/44 (18%), Positives = 25/44 (56%)
Frame = +1
Query: 61 YVRIIMDNSTYKCFCSASSSDFRVYNKHGYVEFMPLTLIRNRDS 192
Y+ ++D +TY + + +++ ++ ++ + + L+R +DS
Sbjct: 1619 YIYGVIDEATYNAYKAKTAARYKASYRYTHDALVYNNLVRAKDS 1662
>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1116
Score = 22.6 bits (46), Expect = 8.5
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -1
Query: 111 SAAKTFVRRIVHNYPDITFETHSMVTINRSHK 16
S+ K + RIV PD T + S+V+ N + K
Sbjct: 793 SSTKLWGSRIVELKPDTTITSGSVVSQNATFK 824
>SPCC338.02 |mug112||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 125
Score = 22.6 bits (46), Expect = 8.5
Identities = 14/53 (26%), Positives = 27/53 (50%)
Frame = -2
Query: 227 LFSKSSRQCCLMESRLRMRVKGINSTYPCLLYTRKSDELALQKHLYVELSIII 69
LF+K+S +C L E++ + NS P R +D ++ + E+++ I
Sbjct: 64 LFAKNSYRCSLKETKCIDVIVSHNSLAPQFTEIRYTDGISAKAENTDEMTMHI 116
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,029,050
Number of Sequences: 5004
Number of extensions: 18256
Number of successful extensions: 54
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 49493712
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -