Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc19c07
(255 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0073 - 19471254-19472681 28 0.90
01_07_0081 - 40959279-40959375,40959463-40959589,40960138-409603... 27 2.1
07_01_0516 - 3850252-3852870 26 3.6
01_01_0563 + 4142351-4144510,4145610-4147259,4147942-4148185,414... 26 3.6
07_01_1116 + 10308029-10308111,10308575-10308737,10308996-103090... 26 4.8
04_04_1607 + 34750114-34750193,34750472-34750622,34750730-347507... 26 4.8
01_06_1720 + 39421381-39421444,39422424-39422601,39422812-394229... 26 4.8
07_03_1576 - 27862043-27862129,27862935-27862988,27863042-278632... 25 6.4
06_03_1496 - 30567968-30568210,30568345-30568513,30568635-305687... 25 6.4
12_02_0648 + 21490202-21490296,21490547-21490634,21491216-214912... 25 8.4
02_03_0412 - 18749430-18749587,18749696-18749857,18750062-187501... 25 8.4
>02_04_0073 - 19471254-19472681
Length = 475
Score = 28.3 bits (60), Expect = 0.90
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -1
Query: 84 IVHNYPDITFETHSMVTIN 28
I+H Y D+ FE HS + +N
Sbjct: 272 IIHGYQDLLFEKHSWIALN 290
>01_07_0081 -
40959279-40959375,40959463-40959589,40960138-40960339,
40962414-40963361
Length = 457
Score = 27.1 bits (57), Expect = 2.1
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +1
Query: 82 NSTYKCFCSASSSDFRVYN 138
N Y CF + + S FR+YN
Sbjct: 105 NQDYGCFAAGTKSGFRIYN 123
>07_01_0516 - 3850252-3852870
Length = 872
Score = 26.2 bits (55), Expect = 3.6
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = -2
Query: 239 LLTVLFSKSSRQCCLMESRLRMRVKGI 159
L + L+S+S+R C +RL+MR KG+
Sbjct: 710 LASNLYSESARWQCSESTRLKMREKGM 736
>01_01_0563 +
4142351-4144510,4145610-4147259,4147942-4148185,
4148280-4148830
Length = 1534
Score = 26.2 bits (55), Expect = 3.6
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +1
Query: 154 EFMPLTLIRNRDSIKQHWRELL 219
EFMP+TL ++ S+ QH +L+
Sbjct: 787 EFMPITLEEDQQSLPQHTSDLV 808
>07_01_1116 +
10308029-10308111,10308575-10308737,10308996-10309062,
10309120-10309375,10309658-10309781,10310039-10310077
Length = 243
Score = 25.8 bits (54), Expect = 4.8
Identities = 7/11 (63%), Positives = 10/11 (90%)
Frame = +1
Query: 31 DCNHAVCFKCY 63
+C+HA+C KCY
Sbjct: 177 NCSHAMCIKCY 187
>04_04_1607 +
34750114-34750193,34750472-34750622,34750730-34750796,
34750905-34751142,34751903-34752113
Length = 248
Score = 25.8 bits (54), Expect = 4.8
Identities = 7/11 (63%), Positives = 10/11 (90%)
Frame = +1
Query: 31 DCNHAVCFKCY 63
+C+HA+C KCY
Sbjct: 166 NCSHAMCMKCY 176
>01_06_1720 +
39421381-39421444,39422424-39422601,39422812-39422980,
39423101-39423170,39423259-39423487,39425130-39425340
Length = 306
Score = 25.8 bits (54), Expect = 4.8
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = +1
Query: 31 DCNHAVCFKCY 63
+CNHA+C CY
Sbjct: 224 NCNHAMCINCY 234
>07_03_1576 -
27862043-27862129,27862935-27862988,27863042-27863243,
27865015-27865249,27865338-27865404,27865489-27865639,
27866898-27866957,27867402-27867466
Length = 306
Score = 25.4 bits (53), Expect = 6.4
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = +1
Query: 34 CNHAVCFKCY 63
C+HA+C KCY
Sbjct: 181 CSHAMCIKCY 190
>06_03_1496 - 30567968-30568210,30568345-30568513,30568635-30568736,
30569087-30571855,30572402-30572430,30572546-30572659,
30572735-30572846,30574730-30574845,30574928-30575068,
30575121-30575243,30575346-30575478,30575842-30575972,
30576065-30576300,30577073-30577376
Length = 1573
Score = 25.4 bits (53), Expect = 6.4
Identities = 10/35 (28%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Frame = +1
Query: 55 KCYVRIIMDNSTYKC--FCSASSSDFRVYNKHGYV 153
+CYV++ M+N+ +C SA+ ++Y+ +V
Sbjct: 1078 RCYVKLTMENTPQECPKLYSATGKQCKLYSAAAHV 1112
>12_02_0648 +
21490202-21490296,21490547-21490634,21491216-21491260,
21491355-21491387,21491480-21491557,21491647-21491690,
21491765-21491805,21492102-21492184,21492261-21492352,
21492468-21492537,21492838-21492876,21493670-21493687,
21494586-21494713,21495235-21495358,21495585-21495716,
21496092-21496223,21496582-21496665
Length = 441
Score = 25.0 bits (52), Expect = 8.4
Identities = 9/33 (27%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +1
Query: 28 IDCNHAVCFKCYVRIIMDNSTYKC-FCSASSSD 123
+DC H + +C+ ++ +++ Y C CS ++ D
Sbjct: 181 LDCGHTMHMECFSEMV-EHNKYTCPICSKTALD 212
>02_03_0412 -
18749430-18749587,18749696-18749857,18750062-18750194,
18751640-18751744,18751818-18751935,18752232-18752320,
18752407-18753660,18753785-18753831,18754285-18754339,
18754783-18754884
Length = 740
Score = 25.0 bits (52), Expect = 8.4
Identities = 21/84 (25%), Positives = 42/84 (50%), Gaps = 16/84 (19%)
Frame = +1
Query: 34 CNHAVCFKCYVR-IIMDNSTYK---------CFCSASSSD-FRVY---NKHGYV-EFMPL 168
C H CF C +R ++M YK CF S+ + + +Y +H +V + +
Sbjct: 247 CGHIYCFPCILRYLLMGKEDYKGESWKKCPLCFMMISTKELYTIYITQVQHFHVGDNVTF 306
Query: 169 TLI-RNRDSIKQHWRELLENNTVN 237
TL+ R+++S+ + L + +T++
Sbjct: 307 TLLSRSKNSLTPSIKNLTDESTID 330
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,112,750
Number of Sequences: 37544
Number of extensions: 100926
Number of successful extensions: 229
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 226
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 229
length of database: 14,793,348
effective HSP length: 63
effective length of database: 12,428,076
effective search space used: 260989596
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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