Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc19c07
         (255 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE013599-3283|AAM71018.2| 2968|Drosophila melanogaster CG13492-P...    30   0.37 
AE013599-3282|AAF46766.2| 2931|Drosophila melanogaster CG13492-P...    30   0.37 
AY089585-1|AAL90323.1|  588|Drosophila melanogaster RE12138p pro...    29   1.1  
AL121806-4|CAB65881.1|  588|Drosophila melanogaster EG:BACR42I17...    29   1.1  
AE014298-155|AAF45587.1|  588|Drosophila melanogaster CG11384-PA...    29   1.1  
BT022844-1|AAY55260.1|  499|Drosophila melanogaster IP12989p pro...    27   3.5  
BT022819-1|AAY55235.1|  499|Drosophila melanogaster IP13189p pro...    27   3.5  
AE014134-2106|AAF53127.1|  584|Drosophila melanogaster CG14934-P...    27   3.5  

>AE013599-3283|AAM71018.2| 2968|Drosophila melanogaster CG13492-PB,
            isoform B protein.
          Length = 2968

 Score = 30.3 bits (65), Expect = 0.37
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +1

Query: 10   SSFVTSIDCNHAVCFKCYVRIIMDNSTYK-CFCSASSSDF 126
            SS V+S DC      +CY R++ D ST + C  S    +F
Sbjct: 1968 SSVVSSTDCTLGGFPECYSRVLSDGSTERGCLSSLEDDEF 2007


>AE013599-3282|AAF46766.2| 2931|Drosophila melanogaster CG13492-PA,
            isoform A protein.
          Length = 2931

 Score = 30.3 bits (65), Expect = 0.37
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +1

Query: 10   SSFVTSIDCNHAVCFKCYVRIIMDNSTYK-CFCSASSSDF 126
            SS V+S DC      +CY R++ D ST + C  S    +F
Sbjct: 1931 SSVVSSTDCTLGGFPECYSRVLSDGSTERGCLSSLEDDEF 1970


>AY089585-1|AAL90323.1|  588|Drosophila melanogaster RE12138p
           protein.
          Length = 588

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +1

Query: 133 YNKHGYVEFMPLTLIRNRDSIKQHWRELLENNTVNNRI 246
           Y + GY+E  PLTL      ++ +   LL++  +  R+
Sbjct: 323 YQRTGYLELRPLTLANGMPRLRHYQHMLLQHRKLEKRL 360


>AL121806-4|CAB65881.1|  588|Drosophila melanogaster EG:BACR42I17.3
           protein.
          Length = 588

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +1

Query: 133 YNKHGYVEFMPLTLIRNRDSIKQHWRELLENNTVNNRI 246
           Y + GY+E  PLTL      ++ +   LL++  +  R+
Sbjct: 323 YQRTGYLELRPLTLANGMPRLRHYQHMLLQHRKLEKRL 360


>AE014298-155|AAF45587.1|  588|Drosophila melanogaster CG11384-PA
           protein.
          Length = 588

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +1

Query: 133 YNKHGYVEFMPLTLIRNRDSIKQHWRELLENNTVNNRI 246
           Y + GY+E  PLTL      ++ +   LL++  +  R+
Sbjct: 323 YQRTGYLELRPLTLANGMPRLRHYQHMLLQHRKLEKRL 360


>BT022844-1|AAY55260.1|  499|Drosophila melanogaster IP12989p
           protein.
          Length = 499

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +1

Query: 199 QHWRELLENNTVNN 240
           QHWR+LL+N T N+
Sbjct: 191 QHWRQLLDNYTANH 204


>BT022819-1|AAY55235.1|  499|Drosophila melanogaster IP13189p
           protein.
          Length = 499

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +1

Query: 199 QHWRELLENNTVNN 240
           QHWR+LL+N T N+
Sbjct: 191 QHWRQLLDNYTANH 204


>AE014134-2106|AAF53127.1|  584|Drosophila melanogaster CG14934-PA
           protein.
          Length = 584

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +1

Query: 199 QHWRELLENNTVNN 240
           QHWR+LL+N T N+
Sbjct: 276 QHWRQLLDNYTANH 289


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,804,458
Number of Sequences: 53049
Number of extensions: 193782
Number of successful extensions: 393
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 379
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 393
length of database: 24,988,368
effective HSP length: 64
effective length of database: 21,593,232
effective search space used: 431864640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)