Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc19c07
(255 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41026-1|AAM51522.2| 101|Caenorhabditis elegans Hypothetical pr... 31 0.086
AL032651-2|CAB60579.1| 272|Caenorhabditis elegans Hypothetical ... 30 0.20
Z99278-7|CAB16488.1| 382|Caenorhabditis elegans Hypothetical pr... 29 0.60
AF016677-4|AAL11109.2| 304|Caenorhabditis elegans Hypothetical ... 28 0.80
Z66524-6|CAA91418.2| 408|Caenorhabditis elegans Hypothetical pr... 27 1.4
Z73972-4|CAA98260.1| 666|Caenorhabditis elegans Hypothetical pr... 26 3.2
BX677430-1|CAI79176.1| 340|Caenorhabditis elegans Hypothetical ... 26 3.2
Z48045-2|CAA88100.2| 967|Caenorhabditis elegans Hypothetical pr... 26 4.3
AF435952-1|AAL30828.1| 967|Caenorhabditis elegans Ser/Thr prote... 26 4.3
AF016677-8|AAB66140.3| 310|Caenorhabditis elegans Hypothetical ... 26 4.3
AF016677-7|AAB66144.1| 292|Caenorhabditis elegans Hypothetical ... 26 4.3
Z82081-2|CAE46685.1| 395|Caenorhabditis elegans Hypothetical pr... 25 5.6
Z82081-1|CAB04961.2| 396|Caenorhabditis elegans Hypothetical pr... 25 5.6
Z19154-2|CAA79554.1| 504|Caenorhabditis elegans Hypothetical pr... 25 5.6
AL132948-9|CAC51067.1| 256|Caenorhabditis elegans Hypothetical ... 25 5.6
AC006608-5|ABC71834.1| 311|Caenorhabditis elegans Hypothetical ... 25 5.6
AC006608-4|AAF39758.2| 381|Caenorhabditis elegans Hypothetical ... 25 5.6
Z92972-5|CAB07484.1| 212|Caenorhabditis elegans Hypothetical pr... 25 7.4
Z81138-6|CAB03476.2| 515|Caenorhabditis elegans Hypothetical pr... 25 7.4
AL023844-14|CAO82065.1| 515|Caenorhabditis elegans Hypothetical... 25 7.4
AL021566-5|CAA16500.1| 212|Caenorhabditis elegans Hypothetical ... 25 7.4
AF047658-6|AAY86253.1| 295|Caenorhabditis elegans Hypothetical ... 25 7.4
Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical pr... 25 9.8
Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical pr... 25 9.8
Z46934-12|CAA87044.3| 539|Caenorhabditis elegans Hypothetical p... 25 9.8
U88173-13|AAM15573.1| 1225|Caenorhabditis elegans Hypothetical p... 25 9.8
U88173-12|AAK21388.1| 1339|Caenorhabditis elegans Hypothetical p... 25 9.8
U40936-1|AAL65777.2| 770|Caenorhabditis elegans Hypothetical pr... 25 9.8
AL031632-6|CAA21008.1| 338|Caenorhabditis elegans Hypothetical ... 25 9.8
AL021503-9|CAA16417.2| 572|Caenorhabditis elegans Hypothetical ... 25 9.8
AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein... 25 9.8
AC006777-3|AAK72309.1| 345|Caenorhabditis elegans Hypothetical ... 25 9.8
>U41026-1|AAM51522.2| 101|Caenorhabditis elegans Hypothetical
protein C28G1.5 protein.
Length = 101
Score = 31.5 bits (68), Expect = 0.086
Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
Frame = +1
Query: 1 NVDSSFVT-SIDCNHAVCFKCYVRIIMDNSTYKC-FC 105
+ DS + ++ C HA+C KC + +++NST +C FC
Sbjct: 15 DTDSEHIPRNLTCGHALCHKC-ITAMVNNSTVECPFC 50
>AL032651-2|CAB60579.1| 272|Caenorhabditis elegans Hypothetical
protein Y6D1A.2 protein.
Length = 272
Score = 30.3 bits (65), Expect = 0.20
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = +1
Query: 28 IDCNHAVCFKCYVRIIMDNSTYKC 99
+DC H +C +C RI +KC
Sbjct: 201 LDCGHTICHECITRIHKPTEPFKC 224
>Z99278-7|CAB16488.1| 382|Caenorhabditis elegans Hypothetical
protein Y53C12B.6 protein.
Length = 382
Score = 28.7 bits (61), Expect = 0.60
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Frame = +1
Query: 37 NHAVCFKCYVRIIMDNSTYKC---FCSASSSDFRVYNKHGYVEFMPLTLIRNR 186
NH V FKC +RI + N + +C CS + S + K V P L++ +
Sbjct: 258 NHIVYFKCNIRITVKNPSGECPVNNCSPNGSTGLISRKARDVFEHPFLLLKQK 310
>AF016677-4|AAL11109.2| 304|Caenorhabditis elegans Hypothetical
protein ZK1240.3 protein.
Length = 304
Score = 28.3 bits (60), Expect = 0.80
Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
Frame = +1
Query: 1 NVDSSFVTSI-DCNHAVCFKCYVRIIMDNSTYKCFCSASSS--DFRVYNKHGYVEFMPLT 171
N+D + I C H++C C ++I ++ Y FC ++ D +V N M
Sbjct: 15 NIDQNHSPKILKCGHSICQICAAKLITNSCIYCPFCRETTKIRDGKVENLKKNFGLMKAI 74
Query: 172 LIRNRDSIKQ 201
I + KQ
Sbjct: 75 EIMKNSTTKQ 84
>Z66524-6|CAA91418.2| 408|Caenorhabditis elegans Hypothetical
protein T13H5.2 protein.
Length = 408
Score = 27.5 bits (58), Expect = 1.4
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +1
Query: 157 FMPLTLIRNRDSIKQHWRELLENNTVNNRII 249
F+P+TL N K +W LENN +N I+
Sbjct: 310 FVPITLEGNVPGRKLYWWWRLENNDINFSIL 340
>Z73972-4|CAA98260.1| 666|Caenorhabditis elegans Hypothetical
protein F15H10.7 protein.
Length = 666
Score = 26.2 bits (55), Expect = 3.2
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +1
Query: 160 MPLTLIRNRDSIKQHWRELLENNTVNNRII 249
MP IR D IK+ + +++EN VN++++
Sbjct: 428 MPFHSIRIPDGIKKKYPQIVENLMVNSKLM 457
>BX677430-1|CAI79176.1| 340|Caenorhabditis elegans Hypothetical
protein VB0395L.1 protein.
Length = 340
Score = 26.2 bits (55), Expect = 3.2
Identities = 11/34 (32%), Positives = 22/34 (64%)
Frame = +1
Query: 154 EFMPLTLIRNRDSIKQHWRELLENNTVNNRIIDF 255
E P+T+ +N +I +++R+ + +N +RII F
Sbjct: 259 ELAPVTVQQNGLTINKYYRQSIVDNISTDRIIQF 292
>Z48045-2|CAA88100.2| 967|Caenorhabditis elegans Hypothetical
protein C41C4.4 protein.
Length = 967
Score = 25.8 bits (54), Expect = 4.3
Identities = 16/53 (30%), Positives = 24/53 (45%)
Frame = +1
Query: 67 RIIMDNSTYKCFCSASSSDFRVYNKHGYVEFMPLTLIRNRDSIKQHWRELLEN 225
RI++ + C A D R + Y F L+R + K H+REL E+
Sbjct: 813 RIVVCGGWREKICDALKEDLRKFRT--YKSFSVRDLLRAMRNKKHHYRELPED 863
>AF435952-1|AAL30828.1| 967|Caenorhabditis elegans Ser/Thr protein
kinase protein.
Length = 967
Score = 25.8 bits (54), Expect = 4.3
Identities = 16/53 (30%), Positives = 24/53 (45%)
Frame = +1
Query: 67 RIIMDNSTYKCFCSASSSDFRVYNKHGYVEFMPLTLIRNRDSIKQHWRELLEN 225
RI++ + C A D R + Y F L+R + K H+REL E+
Sbjct: 813 RIVVCGGWREKICDALKEDLRKFRT--YKSFSVRDLLRAMRNKKHHYRELPED 863
>AF016677-8|AAB66140.3| 310|Caenorhabditis elegans Hypothetical
protein ZK1240.1 protein.
Length = 310
Score = 25.8 bits (54), Expect = 4.3
Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +1
Query: 28 IDCNHAVCFKCYVRIIMDNSTYKC-FCSASSS 120
+ C H+VC +C ++ NS C FC ++S
Sbjct: 26 LKCGHSVC-QCCATKLLKNSAISCPFCRETTS 56
>AF016677-7|AAB66144.1| 292|Caenorhabditis elegans Hypothetical
protein ZK1240.8 protein.
Length = 292
Score = 25.8 bits (54), Expect = 4.3
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +1
Query: 1 NVDSSFVTSI-DCNHAVCFKCYVRIIMDNSTYKC 99
N+D S + C H++C C V++I NS C
Sbjct: 15 NLDESRAPRVLKCGHSICQNCAVKLI-SNSVILC 47
>Z82081-2|CAE46685.1| 395|Caenorhabditis elegans Hypothetical
protein W09H1.1b protein.
Length = 395
Score = 25.4 bits (53), Expect = 5.6
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +1
Query: 97 CFCSASSSDFRVYNKHGYVE 156
CFC+ SSS FR Y + E
Sbjct: 254 CFCNRSSSHFRYYLSYSLPE 273
>Z82081-1|CAB04961.2| 396|Caenorhabditis elegans Hypothetical
protein W09H1.1a protein.
Length = 396
Score = 25.4 bits (53), Expect = 5.6
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +1
Query: 97 CFCSASSSDFRVYNKHGYVE 156
CFC+ SSS FR Y + E
Sbjct: 255 CFCNRSSSHFRYYLSYSLPE 274
>Z19154-2|CAA79554.1| 504|Caenorhabditis elegans Hypothetical
protein C40H1.3 protein.
Length = 504
Score = 25.4 bits (53), Expect = 5.6
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +1
Query: 154 EFMPLTLIRNRDSIKQHWRELLENNTVNNR 243
++ PL I D+ +++WRE L NN NN+
Sbjct: 383 QWCPLCTIAVEDN-EENWREHLLNNCYNNQ 411
>AL132948-9|CAC51067.1| 256|Caenorhabditis elegans Hypothetical
protein Y39B6A.10 protein.
Length = 256
Score = 25.4 bits (53), Expect = 5.6
Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Frame = +1
Query: 43 AVCFKCYVRIIM-DNSTYKCFCSASSSDFRVYNKHGYVEFMPLTLIRNRDSIKQHWRELL 219
A+C K V + + D + ++ F S R+ K L ++R +++KQ + ++L
Sbjct: 130 ALCQKLPVLVTLRDVTEFQIFAQKSEVPLRIQYKK-----RKLKILRISENLKQFFTKML 184
Query: 220 ENNTVNNRIIDF 255
N+T +I F
Sbjct: 185 GNSTSGTHLIYF 196
>AC006608-5|ABC71834.1| 311|Caenorhabditis elegans Hypothetical
protein C15F1.5b protein.
Length = 311
Score = 25.4 bits (53), Expect = 5.6
Identities = 7/16 (43%), Positives = 12/16 (75%)
Frame = +1
Query: 13 SFVTSIDCNHAVCFKC 60
+F + ++C+H VC KC
Sbjct: 123 NFPSELECDHDVCIKC 138
>AC006608-4|AAF39758.2| 381|Caenorhabditis elegans Hypothetical
protein C15F1.5a protein.
Length = 381
Score = 25.4 bits (53), Expect = 5.6
Identities = 7/16 (43%), Positives = 12/16 (75%)
Frame = +1
Query: 13 SFVTSIDCNHAVCFKC 60
+F + ++C+H VC KC
Sbjct: 193 NFPSELECDHDVCIKC 208
>Z92972-5|CAB07484.1| 212|Caenorhabditis elegans Hypothetical
protein T19C9.5 protein.
Length = 212
Score = 25.0 bits (52), Expect = 7.4
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -2
Query: 242 RLLTVLFSKSSRQCCLMESRLRMRVKGIN 156
RL +L+SKS C+ ES ++ KGIN
Sbjct: 135 RLRQMLYSKSKSIGCIYESCDKIDSKGIN 163
>Z81138-6|CAB03476.2| 515|Caenorhabditis elegans Hypothetical
protein W05B2.7 protein.
Length = 515
Score = 25.0 bits (52), Expect = 7.4
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 9/62 (14%)
Frame = -2
Query: 248 IMRLLTVLFSKSSRQCCLMESRLRMRVKGINSTYPCLLY-------TRKSDELA--LQKH 96
I R+L L KSSR+ CL S ++ + S P Y T K ++A LQKH
Sbjct: 341 INRILRTL--KSSRRFCLFLSTTDSLLQNVRSVLPGATYLDISPPLTWKEPQMAVSLQKH 398
Query: 95 LY 90
+Y
Sbjct: 399 VY 400
>AL023844-14|CAO82065.1| 515|Caenorhabditis elegans Hypothetical
protein W05B2.7 protein.
Length = 515
Score = 25.0 bits (52), Expect = 7.4
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 9/62 (14%)
Frame = -2
Query: 248 IMRLLTVLFSKSSRQCCLMESRLRMRVKGINSTYPCLLY-------TRKSDELA--LQKH 96
I R+L L KSSR+ CL S ++ + S P Y T K ++A LQKH
Sbjct: 341 INRILRTL--KSSRRFCLFLSTTDSLLQNVRSVLPGATYLDISPPLTWKEPQMAVSLQKH 398
Query: 95 LY 90
+Y
Sbjct: 399 VY 400
>AL021566-5|CAA16500.1| 212|Caenorhabditis elegans Hypothetical
protein F08E10.7 protein.
Length = 212
Score = 25.0 bits (52), Expect = 7.4
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -2
Query: 242 RLLTVLFSKSSRQCCLMESRLRMRVKGIN 156
RL +L+SKS C+ ES ++ KGIN
Sbjct: 135 RLRQMLYSKSKSIGCIYESCDKIDSKGIN 163
>AF047658-6|AAY86253.1| 295|Caenorhabditis elegans Hypothetical
protein K03H6.6 protein.
Length = 295
Score = 25.0 bits (52), Expect = 7.4
Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 3/52 (5%)
Frame = +1
Query: 88 TYKCFCSASSSDFRVYNKHGYVEFMPLTLIRNRDSI--KQH-WRELLENNTV 234
T CFC + SS Y KH + F+ L R K H WR L+ +
Sbjct: 19 TQHCFCLSLSSPTISYRKHEKLNFLRDGLARRWQYFRRKYHFWRVALDTTVL 70
>Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical protein
F15D3.1a protein.
Length = 3674
Score = 24.6 bits (51), Expect = 9.8
Identities = 10/29 (34%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Frame = +1
Query: 172 LIRNRDSIKQHWRELLEN--NTVNNRIID 252
L+R D ++ W++L EN V +R++D
Sbjct: 1341 LVRMLDGAQEKWKDLAENREQLVKDRVLD 1369
>Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical protein
F15D3.1a protein.
Length = 3674
Score = 24.6 bits (51), Expect = 9.8
Identities = 10/29 (34%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Frame = +1
Query: 172 LIRNRDSIKQHWRELLEN--NTVNNRIID 252
L+R D ++ W++L EN V +R++D
Sbjct: 1341 LVRMLDGAQEKWKDLAENREQLVKDRVLD 1369
>Z46934-12|CAA87044.3| 539|Caenorhabditis elegans Hypothetical
protein ZK1320.6 protein.
Length = 539
Score = 24.6 bits (51), Expect = 9.8
Identities = 8/22 (36%), Positives = 11/22 (50%)
Frame = +1
Query: 34 CNHAVCFKCYVRIIMDNSTYKC 99
C H +C C + I NS+ C
Sbjct: 28 CGHTICHNCAISIAGRNSSIFC 49
>U88173-13|AAM15573.1| 1225|Caenorhabditis elegans Hypothetical
protein F46F11.1b protein.
Length = 1225
Score = 24.6 bits (51), Expect = 9.8
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Frame = +1
Query: 121 DFRVYNKHGYVEFMPLTLIRNRDSIK---QHWRELLENNTV 234
+FR NKHG VEF + D+IK +H +L NN V
Sbjct: 717 EFRRKNKHGEVEFDISKIPDIYDNIKYDMEHNPDLCINNEV 757
>U88173-12|AAK21388.1| 1339|Caenorhabditis elegans Hypothetical
protein F46F11.1a protein.
Length = 1339
Score = 24.6 bits (51), Expect = 9.8
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Frame = +1
Query: 121 DFRVYNKHGYVEFMPLTLIRNRDSIK---QHWRELLENNTV 234
+FR NKHG VEF + D+IK +H +L NN V
Sbjct: 717 EFRRKNKHGEVEFDISKIPDIYDNIKYDMEHNPDLCINNEV 757
>U40936-1|AAL65777.2| 770|Caenorhabditis elegans Hypothetical
protein C13E3.1 protein.
Length = 770
Score = 24.6 bits (51), Expect = 9.8
Identities = 17/73 (23%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
Frame = +1
Query: 22 TSIDCNHAVCF----KCYVRIIMDNSTYKCFCSASSSDFRVYNKHGYVEFMPLTLIRNRD 189
+S++ N CF + ++R I ST S F+ ++ ++P +L++ +
Sbjct: 30 SSLEQNDQYCFSWFNQLHLREIYVRSTAAIEVLKSDEAFKTFSSSA--SYLPRSLLKRKQ 87
Query: 190 SIKQHWRELLENN 228
+ K H R L N
Sbjct: 88 APKMHRRRLQARN 100
>AL031632-6|CAA21008.1| 338|Caenorhabditis elegans Hypothetical
protein Y32B12B.6 protein.
Length = 338
Score = 24.6 bits (51), Expect = 9.8
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +1
Query: 85 STYKCFCSASSSDFRVYNKHGYVEFMPLTLIRN 183
STY+ F S+S N G+V FM L + N
Sbjct: 270 STYQNFYSSSLFKICSMNNSGHVRFMELLSLTN 302
>AL021503-9|CAA16417.2| 572|Caenorhabditis elegans Hypothetical
protein Y68A4A.5 protein.
Length = 572
Score = 24.6 bits (51), Expect = 9.8
Identities = 9/34 (26%), Positives = 16/34 (47%)
Frame = +1
Query: 1 NVDSSFVTSIDCNHAVCFKCYVRIIMDNSTYKCF 102
N D ++ C F+C + M N+ Y+C+
Sbjct: 383 NSDGCTTLAVKCTINAGFECDIAKCMANAAYECY 416
>AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein
protein.
Length = 3674
Score = 24.6 bits (51), Expect = 9.8
Identities = 10/29 (34%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Frame = +1
Query: 172 LIRNRDSIKQHWRELLEN--NTVNNRIID 252
L+R D ++ W++L EN V +R++D
Sbjct: 1341 LVRMLDGAQEKWKDLAENREQLVKDRVLD 1369
>AC006777-3|AAK72309.1| 345|Caenorhabditis elegans Hypothetical
protein Y46H3D.6 protein.
Length = 345
Score = 24.6 bits (51), Expect = 9.8
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = -2
Query: 212 SRQCCLMESRLRMRVKGINSTYPCLLYTRKSDELALQKHLYVELSI 75
S +C + ++LR RV STY YT L + + +Y+ S+
Sbjct: 264 SEECIKVCNQLRARVNAELSTYEKTFYTAGDYSLRVAEVVYLLQSV 309
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,670,854
Number of Sequences: 27780
Number of extensions: 104219
Number of successful extensions: 342
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 337
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 342
length of database: 12,740,198
effective HSP length: 63
effective length of database: 10,990,058
effective search space used: 230791218
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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