Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc19c03
(782 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024817-43|AAK93865.2| 151|Caenorhabditis elegans Ubiquitin co... 122 4e-28
Z68337-1|CAA92745.1| 147|Caenorhabditis elegans Hypothetical pr... 76 3e-14
S56051-1|AAB25489.2| 147|Caenorhabditis elegans ubiquitin-conju... 76 3e-14
U39674-5|AAA80415.2| 229|Caenorhabditis elegans Ubiquitin conju... 58 7e-09
AF099919-11|AAC68796.1| 199|Caenorhabditis elegans Ubiquitin co... 58 7e-09
U08139-1|AAA83388.1| 192|Caenorhabditis elegans ubc-1 protein. 52 6e-07
AF045638-8|AAC02561.2| 192|Caenorhabditis elegans Ubiquitin con... 52 6e-07
U00035-7|AAA50648.2| 153|Caenorhabditis elegans Ubiquitin conju... 48 8e-06
U70849-3|AAK67232.1| 166|Caenorhabditis elegans Ubiquitin conju... 44 2e-04
AF106565-1|AAC97374.1| 166|Caenorhabditis elegans ubiquitin-con... 44 2e-04
AL110500-10|CAB60431.1| 170|Caenorhabditis elegans Hypothetical... 41 9e-04
Z22179-13|CAA80166.1| 164|Caenorhabditis elegans Hypothetical p... 38 0.006
AC025726-12|AAK73914.3| 243|Caenorhabditis elegans Ubiquitin co... 37 0.014
AC024876-5|AAF60891.2| 221|Caenorhabditis elegans Ubiquitin con... 37 0.019
AL032653-6|CAA21716.1| 152|Caenorhabditis elegans Hypothetical ... 36 0.043
U41026-5|AAA82352.2| 546|Caenorhabditis elegans Ubiquitin conju... 35 0.075
Z66520-3|CAA91389.2| 160|Caenorhabditis elegans Hypothetical pr... 32 0.53
Z92773-4|CAB07130.2| 584|Caenorhabditis elegans Hypothetical pr... 28 6.6
Z81114-8|CAB97236.1| 584|Caenorhabditis elegans Hypothetical pr... 28 6.6
Z54342-15|CAK55172.1| 465|Caenorhabditis elegans Hypothetical p... 28 6.6
AL032655-1|CAA21726.1| 995|Caenorhabditis elegans Hypothetical ... 28 8.7
>AC024817-43|AAK93865.2| 151|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein13 protein.
Length = 151
Score = 122 bits (293), Expect = 4e-28
Identities = 56/69 (81%), Positives = 61/69 (88%)
Frame = -2
Query: 781 IDRLGRIXLDIXKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAELWKVNESEAIRN 602
ID+LGRI LDI KDKWSPALQIRTVLLSIQALLSAPNP+DPLA DVAE WK NE+EAI+
Sbjct: 81 IDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPEDPLATDVAEQWKTNEAEAIKT 140
Query: 601 AKEWTRRYA 575
AK+WT YA
Sbjct: 141 AKQWTMNYA 149
>Z68337-1|CAA92745.1| 147|Caenorhabditis elegans Hypothetical
protein M7.1 protein.
Length = 147
Score = 75.8 bits (178), Expect = 3e-14
Identities = 35/70 (50%), Positives = 48/70 (68%)
Frame = -2
Query: 781 IDRLGRIXLDIXKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAELWKVNESEAIRN 602
I+ G I LDI + +WSPAL I VLLSI +LL PNPDDPL ++A ++K + +
Sbjct: 78 INSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRERYNQL 137
Query: 601 AKEWTRRYAM 572
A+EWT++YAM
Sbjct: 138 AREWTQKYAM 147
>S56051-1|AAB25489.2| 147|Caenorhabditis elegans
ubiquitin-conjugating enzyme protein.
Length = 147
Score = 75.8 bits (178), Expect = 3e-14
Identities = 35/70 (50%), Positives = 48/70 (68%)
Frame = -2
Query: 781 IDRLGRIXLDIXKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAELWKVNESEAIRN 602
I+ G I LDI + +WSPAL I VLLSI +LL PNPDDPL ++A ++K + +
Sbjct: 78 INSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRERYNQL 137
Query: 601 AKEWTRRYAM 572
A+EWT++YAM
Sbjct: 138 AREWTQKYAM 147
>U39674-5|AAA80415.2| 229|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein21 protein.
Length = 229
Score = 58.0 bits (134), Expect = 7e-09
Identities = 30/65 (46%), Positives = 39/65 (60%)
Frame = -2
Query: 769 GRIXLDIXKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAELWKVNESEAIRNAKEW 590
G I LDI KDKW+ +L +RTVLLS+QA+L +P P DP VA+ + N A W
Sbjct: 118 GTICLDILKDKWTASLTLRTVLLSLQAMLCSPEPSDPQDAVVAKQFINNYPMFTATAVYW 177
Query: 589 TRRYA 575
T +A
Sbjct: 178 TSYFA 182
>AF099919-11|AAC68796.1| 199|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein20 protein.
Length = 199
Score = 58.0 bits (134), Expect = 7e-09
Identities = 29/65 (44%), Positives = 40/65 (61%)
Frame = -2
Query: 769 GRIXLDIXKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAELWKVNESEAIRNAKEW 590
G I LDI KD+W+ +L +RTVLLSIQAL+ P P DP VA+ + + A+ W
Sbjct: 89 GVICLDILKDQWAASLTLRTVLLSIQALMCTPEPKDPQDAVVAKQYMEKPAVFKATAEYW 148
Query: 589 TRRYA 575
T ++A
Sbjct: 149 TTKFA 153
>U08139-1|AAA83388.1| 192|Caenorhabditis elegans ubc-1 protein.
Length = 192
Score = 51.6 bits (118), Expect = 6e-07
Identities = 22/52 (42%), Positives = 33/52 (63%)
Frame = -2
Query: 769 GRIXLDIXKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAELWKVNESE 614
G I LDI +++WSP + +L SIQ+LL PNP+ P + A+L++ N E
Sbjct: 85 GSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNSPANSLAAQLYQENRRE 136
>AF045638-8|AAC02561.2| 192|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein1 protein.
Length = 192
Score = 51.6 bits (118), Expect = 6e-07
Identities = 22/52 (42%), Positives = 33/52 (63%)
Frame = -2
Query: 769 GRIXLDIXKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAELWKVNESE 614
G I LDI +++WSP + +L SIQ+LL PNP+ P + A+L++ N E
Sbjct: 85 GSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNSPANSLAAQLYQENRRE 136
>U00035-7|AAA50648.2| 153|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein18 protein.
Length = 153
Score = 48.0 bits (109), Expect = 8e-06
Identities = 21/70 (30%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Frame = -2
Query: 781 IDRLGRIXLDIXK-DKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAELWKVNESEAIR 605
+D G+ L I + W PA + V++++ +L++ P P P+ DVAE ++ + + ++
Sbjct: 79 VDEEGKFCLPIVTAENWKPATKTEQVMMALLSLINEPEPSHPIRADVAEEFQKDHKKFMK 138
Query: 604 NAKEWTRRYA 575
A+E TR++A
Sbjct: 139 TAEEHTRKHA 148
>U70849-3|AAK67232.1| 166|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein9 protein.
Length = 166
Score = 43.6 bits (98), Expect = 2e-04
Identities = 21/63 (33%), Positives = 37/63 (58%)
Frame = -2
Query: 757 LDIXKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAELWKVNESEAIRNAKEWTRRY 578
LD KD W P++ I+ +L+ IQ LL+ PN +DP + +++ N +E + K+ +Y
Sbjct: 97 LDENKD-WKPSISIKQLLIGIQDLLNHPNIEDPAQAEAYQIYCQNRAEYEKRVKKEAVKY 155
Query: 577 AMD 569
A +
Sbjct: 156 AAE 158
>AF106565-1|AAC97374.1| 166|Caenorhabditis elegans
ubiquitin-conjugating enzyme 9homolog protein.
Length = 166
Score = 43.6 bits (98), Expect = 2e-04
Identities = 21/63 (33%), Positives = 37/63 (58%)
Frame = -2
Query: 757 LDIXKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAELWKVNESEAIRNAKEWTRRY 578
LD KD W P++ I+ +L+ IQ LL+ PN +DP + +++ N +E + K+ +Y
Sbjct: 97 LDENKD-WKPSISIKQLLIGIQDLLNHPNIEDPAQAEAYQIYCQNRAEYEKRVKKEAVKY 155
Query: 577 AMD 569
A +
Sbjct: 156 AAE 158
>AL110500-10|CAB60431.1| 170|Caenorhabditis elegans Hypothetical
protein Y87G2A.9 protein.
Length = 170
Score = 41.1 bits (92), Expect = 9e-04
Identities = 15/58 (25%), Positives = 33/58 (56%)
Frame = -2
Query: 754 DIXKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAELWKVNESEAIRNAKEWTRR 581
++ ++WSP I +LLS+ ++L+ PN + P A++W+ + ++ + A R+
Sbjct: 104 ELSNERWSPVQSIEKILLSVVSMLAEPNDESPANVSAAKMWREDRAQFEKIADSLVRK 161
>Z22179-13|CAA80166.1| 164|Caenorhabditis elegans Hypothetical
protein F58A4.10 protein.
Length = 164
Score = 38.3 bits (85), Expect = 0.006
Identities = 16/55 (29%), Positives = 32/55 (58%)
Frame = -2
Query: 745 KDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAELWKVNESEAIRNAKEWTRR 581
+++W P + T+LLS+ ++L+ PN + P D A++ + N +E + + RR
Sbjct: 106 EERWLPVHTVETILLSVISMLTDPNFESPANVDAAKMQRENYAEFKKKVAQCVRR 160
>AC025726-12|AAK73914.3| 243|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein3 protein.
Length = 243
Score = 37.1 bits (82), Expect = 0.014
Identities = 13/38 (34%), Positives = 25/38 (65%)
Frame = -2
Query: 742 DKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAELWK 629
++W+P +RT+LLS+ +LL+ PN P D + +++
Sbjct: 113 ERWNPTQSVRTILLSVISLLNEPNTSSPANVDASVMYR 150
>AC024876-5|AAF60891.2| 221|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein8 protein.
Length = 221
Score = 36.7 bits (81), Expect = 0.019
Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = -2
Query: 769 GRIXLDIXKDKWSPALQIRTVLLS-IQALLSAPNPDDPLANDVAELWKVNESEAIRNAKE 593
G + LD+ W+ + + + + LL+ PN DPL + A L+ E R +E
Sbjct: 85 GTVCLDVINQAWTALYDLTNIFDTFLPQLLTYPNAADPLNGEAARLYIHKPEEYRRTCRE 144
Query: 592 WTRRYAMDN 566
+ R+A ++
Sbjct: 145 YVMRFASEH 153
>AL032653-6|CAA21716.1| 152|Caenorhabditis elegans Hypothetical
protein Y54E5B.4 protein.
Length = 152
Score = 35.5 bits (78), Expect = 0.043
Identities = 15/31 (48%), Positives = 22/31 (70%)
Frame = -2
Query: 769 GRIXLDIXKDKWSPALQIRTVLLSIQALLSA 677
G I L I D W+PAL +++V LSI ++LS+
Sbjct: 89 GHICLSILSDDWTPALSVQSVCLSILSMLSS 119
>U41026-5|AAA82352.2| 546|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein23 protein.
Length = 546
Score = 34.7 bits (76), Expect = 0.075
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = -2
Query: 769 GRIXL-DIXKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAELWKVNESEAIRNAKE 593
G I L D+ W ++ I VL+ IQ+ +S N +P+ ++ E N + A+
Sbjct: 431 GTICLHDVDNGVWPVSMTIYKVLIVIQSWMSNFNEKEPIDVEILEQATNNREVFEKTAEF 490
Query: 592 WTRRYA 575
WT+R+A
Sbjct: 491 WTKRFA 496
>Z66520-3|CAA91389.2| 160|Caenorhabditis elegans Hypothetical
protein F49E12.4 protein.
Length = 160
Score = 31.9 bits (69), Expect = 0.53
Identities = 14/58 (24%), Positives = 31/58 (53%)
Frame = -2
Query: 751 IXKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAELWKVNESEAIRNAKEWTRRY 578
+ ++ W P + VLL++ LL+ P+ P+ D A + N+ E ++ + E +++
Sbjct: 102 LLQENWKPETTMEDVLLNLIVLLNEPDLSRPVNIDAAHDYIHNKVEFVKKSTELAKKW 159
>Z92773-4|CAB07130.2| 584|Caenorhabditis elegans Hypothetical
protein W08E3.2 protein.
Length = 584
Score = 28.3 bits (60), Expect = 6.6
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +3
Query: 336 SVGSPSRSEANKVRQWITAKGPAPRPSSTNNKNLIH 443
S G+P S +N+ +++GP P PSS++ ++ H
Sbjct: 315 SSGAPPSSASNRRPVESSSRGPPPPPSSSSRRDYSH 350
>Z81114-8|CAB97236.1| 584|Caenorhabditis elegans Hypothetical
protein W08E3.2 protein.
Length = 584
Score = 28.3 bits (60), Expect = 6.6
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +3
Query: 336 SVGSPSRSEANKVRQWITAKGPAPRPSSTNNKNLIH 443
S G+P S +N+ +++GP P PSS++ ++ H
Sbjct: 315 SSGAPPSSASNRRPVESSSRGPPPPPSSSSRRDYSH 350
>Z54342-15|CAK55172.1| 465|Caenorhabditis elegans Hypothetical
protein C08H9.4b protein.
Length = 465
Score = 28.3 bits (60), Expect = 6.6
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -2
Query: 667 DDPLANDVAELWKVNESEAIRNAKEW 590
D PL +D +WKVNES + A W
Sbjct: 346 DLPLRDDSDNIWKVNESGRLAVALRW 371
>AL032655-1|CAA21726.1| 995|Caenorhabditis elegans Hypothetical
protein Y6B3B.3 protein.
Length = 995
Score = 27.9 bits (59), Expect = 8.7
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = -2
Query: 691 ALLSAPNPDDPLAN-DVAELWKVNESEAIRNAKEWT 587
AL+ NP N DVAE+ + N S I N EWT
Sbjct: 286 ALVELKNPTVNAENEDVAEVKERNRSIVIHNVPEWT 321
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,498,951
Number of Sequences: 27780
Number of extensions: 341165
Number of successful extensions: 785
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 785
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1893203640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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