Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc19c01
         (866 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1683.07 |mal1||alpha-glucosidase Mal1 |Schizosaccharomyces p...    28   1.5  
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    27   2.6  
SPBC651.03c |gyp10||GTPase activating protein Gyp10|Schizosaccha...    27   3.5  

>SPBC1683.07 |mal1||alpha-glucosidase Mal1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 579

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 26/79 (32%), Positives = 35/79 (44%), Gaps = 4/79 (5%)
 Frame = -2

Query: 730 MDLVSLETSDENEWVK-ARIVQDKIK---YIWTSGRLCDFKGCNRPDLLPNEINGWFWTA 563
           MDLV   TSD++EW K +R  +   K   Y W   R  + KG   P   PN    +F T+
Sbjct: 105 MDLVLNHTSDQHEWFKESRSSKTNPKRDWYFWKPARYNE-KGERLP---PNNWRSYFDTS 160

Query: 562 ELQKLAPTTNRQQNDWSEG 506
             +    T     + WS G
Sbjct: 161 AWEWDEATQEYYLHLWSVG 179


>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2310

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -2

Query: 334  YVRYTNPNLRV*LSMTSLYTFITKK 260
            Y+RY NP+LR  +   + Y F+T++
Sbjct: 988  YLRYGNPSLRYSVMFLASYCFVTRR 1012


>SPBC651.03c |gyp10||GTPase activating protein
           Gyp10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 373

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +3

Query: 636 RPDVQMYFILSWTIRALTHSFSSL 707
           + D+Q YF LSW I    H  S +
Sbjct: 183 KADIQCYFALSWLITWFAHDVSDI 206


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,394,834
Number of Sequences: 5004
Number of extensions: 68681
Number of successful extensions: 183
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)