Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc19c01
         (866 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL031632-7|CAA21009.2| 1528|Caenorhabditis elegans Hypothetical ...    32   0.61 
Z82053-9|CAJ85768.1|  189|Caenorhabditis elegans Hypothetical pr...    31   0.81 
Z82053-8|CAB61018.2|  309|Caenorhabditis elegans Hypothetical pr...    31   0.81 
Z81542-1|CAB04414.1|  379|Caenorhabditis elegans Hypothetical pr...    31   0.81 
AF070968-1|AAD15926.1|  309|Caenorhabditis elegans PAR-6 protein.      31   0.81 
U21324-18|AAA62570.2|  419|Caenorhabditis elegans C-type lectin ...    31   1.1  
Z81506-1|CAB04128.1|  555|Caenorhabditis elegans Hypothetical pr...    31   1.4  
Z81492-6|CAB04034.1|  416|Caenorhabditis elegans Hypothetical pr...    31   1.4  
U64836-4|AAG24059.1|  417|Caenorhabditis elegans Hypothetical pr...    31   1.4  
Z81593-11|CAI94505.2|  360|Caenorhabditis elegans Hypothetical p...    29   3.3  
U41992-4|AAL02506.2|  876|Caenorhabditis elegans Hypothetical pr...    29   3.3  
U00052-1|AAK95880.2|  308|Caenorhabditis elegans Hypothetical pr...    29   3.3  
AL023821-1|CAA19438.2|  355|Caenorhabditis elegans Hypothetical ...    29   3.3  
Z84574-8|CAE54891.1|  921|Caenorhabditis elegans Hypothetical pr...    29   5.7  
Z84574-7|CAB06544.3|  928|Caenorhabditis elegans Hypothetical pr...    29   5.7  
Z84574-1|CAE54890.1|  577|Caenorhabditis elegans Hypothetical pr...    29   5.7  
Z82052-3|CAB04826.1|  363|Caenorhabditis elegans Hypothetical pr...    29   5.7  
AL022593-4|CAE54889.1|  921|Caenorhabditis elegans Hypothetical ...    29   5.7  
AL022593-3|CAA18635.3|  928|Caenorhabditis elegans Hypothetical ...    29   5.7  
Z81028-3|CAB02691.1|  545|Caenorhabditis elegans Hypothetical pr...    28   9.9  
U21324-19|AAK68224.1|  407|Caenorhabditis elegans C-type lectin ...    28   9.9  

>AL031632-7|CAA21009.2| 1528|Caenorhabditis elegans Hypothetical
           protein Y32B12B.4 protein.
          Length = 1528

 Score = 31.9 bits (69), Expect = 0.61
 Identities = 18/81 (22%), Positives = 38/81 (46%), Gaps = 5/81 (6%)
 Frame = -2

Query: 502 GIGKPQPDNRELI---QGGASEHCVAILNNFYNDGVHWHDVACHHRKPFVCEENDALLK- 335
           G     P++ E +   +  A+E+C  ++N+FY        +   H + F+C   +  +K 
Sbjct: 582 GTADDVPESHEALAQQKTAANEYCFTVINDFYQSHKTAQRILYDHTRCFLCATKNCSVKI 641

Query: 334 -YVRYTNPNLRV*LSMTSLYT 275
            ++ Y    + + LS++S  T
Sbjct: 642 VFIEYEKYIIAIGLSLSSAAT 662


>Z82053-9|CAJ85768.1|  189|Caenorhabditis elegans Hypothetical
           protein T26E3.3b protein.
          Length = 189

 Score = 31.5 bits (68), Expect = 0.81
 Identities = 19/48 (39%), Positives = 26/48 (54%)
 Frame = -3

Query: 828 LTIKDTSSRGGTQRSAASKKTG*AQETTADNAAWT*YLSRPAMKMNGS 685
           +T+K  + R    R  + + T  A E +A  AA T  + RP MKMNGS
Sbjct: 123 ITVKPANQRNTLSRGPSQQGTPNASEMSAATAAATGGIQRP-MKMNGS 169


>Z82053-8|CAB61018.2|  309|Caenorhabditis elegans Hypothetical
           protein T26E3.3a protein.
          Length = 309

 Score = 31.5 bits (68), Expect = 0.81
 Identities = 19/48 (39%), Positives = 26/48 (54%)
 Frame = -3

Query: 828 LTIKDTSSRGGTQRSAASKKTG*AQETTADNAAWT*YLSRPAMKMNGS 685
           +T+K  + R    R  + + T  A E +A  AA T  + RP MKMNGS
Sbjct: 243 ITVKPANQRNTLSRGPSQQGTPNASEMSAATAAATGGIQRP-MKMNGS 289


>Z81542-1|CAB04414.1|  379|Caenorhabditis elegans Hypothetical
           protein F49A5.2 protein.
          Length = 379

 Score = 31.5 bits (68), Expect = 0.81
 Identities = 13/36 (36%), Positives = 25/36 (69%)
 Frame = -2

Query: 757 ARNYCRQRCMDLVSLETSDENEWVKARIVQDKIKYI 650
           A+ +C+ +C +LVS+ +++EN +V++ I  D   YI
Sbjct: 267 AQTFCKTKCANLVSINSANENRYVQS-IYNDTNGYI 301


>AF070968-1|AAD15926.1|  309|Caenorhabditis elegans PAR-6 protein.
          Length = 309

 Score = 31.5 bits (68), Expect = 0.81
 Identities = 19/48 (39%), Positives = 26/48 (54%)
 Frame = -3

Query: 828 LTIKDTSSRGGTQRSAASKKTG*AQETTADNAAWT*YLSRPAMKMNGS 685
           +T+K  + R    R  + + T  A E +A  AA T  + RP MKMNGS
Sbjct: 243 ITVKPANQRNTLSRGPSQQGTPNASEMSAATAAATGGIQRP-MKMNGS 289


>U21324-18|AAA62570.2|  419|Caenorhabditis elegans C-type lectin
           protein 5 protein.
          Length = 419

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 14/51 (27%), Positives = 27/51 (52%)
 Frame = -2

Query: 832 YADNKGYFFSWRDPALRGVEEDWLSARNYCRQRCMDLVSLETSDENEWVKA 680
           +ADN  Y ++     L      ++ A+  C Q C +L S+ +S+EN ++ +
Sbjct: 155 HADNCTYNYNGHCFTLHTERNTFVQAQAICEQECGNLASIHSSNENRYLSS 205


>Z81506-1|CAB04128.1|  555|Caenorhabditis elegans Hypothetical
           protein F16H6.1 protein.
          Length = 555

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 12/36 (33%), Positives = 23/36 (63%)
 Frame = -2

Query: 757 ARNYCRQRCMDLVSLETSDENEWVKARIVQDKIKYI 650
           A++ C+Q C +LVS+ + +EN +V++    +   YI
Sbjct: 189 AQSACQQECGNLVSIHSDEENNFVQSLFTTNSPTYI 224


>Z81492-6|CAB04034.1|  416|Caenorhabditis elegans Hypothetical
           protein E03H4.10 protein.
          Length = 416

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 15/56 (26%), Positives = 29/56 (51%)
 Frame = -2

Query: 832 YADNKGYFFSWRDPALRGVEEDWLSARNYCRQRCMDLVSLETSDENEWVKARIVQD 665
           +AD+  Y ++          E ++ A+  C +   DLVS+ +S+EN +++    QD
Sbjct: 157 HADDCTYNYNGYCYTFSSTAEPFIIAQTKCAETYGDLVSIHSSNENRYIETFAAQD 212


>U64836-4|AAG24059.1|  417|Caenorhabditis elegans Hypothetical
           protein F10G2.3 protein.
          Length = 417

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = -2

Query: 775 EEDWLSARNYCRQRCMDLVSLETSDENEWV 686
           E  ++ A+N C Q C DL ++ T++EN ++
Sbjct: 175 EASFVVAQNTCEQFCGDLATIHTANENRYI 204


>Z81593-11|CAI94505.2|  360|Caenorhabditis elegans Hypothetical
           protein T20B3.16 protein.
          Length = 360

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 13/44 (29%), Positives = 27/44 (61%)
 Frame = -2

Query: 757 ARNYCRQRCMDLVSLETSDENEWVKARIVQDKIKYIWTSGRLCD 626
           A+ +C+ +C ++VS+ +++EN +V++ I   K  YI     + D
Sbjct: 258 AQKFCKTKCANVVSINSANENRYVQS-IYYIKDGYITLGAAVLD 300


>U41992-4|AAL02506.2|  876|Caenorhabditis elegans Hypothetical
           protein F32E10.3 protein.
          Length = 876

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 9/33 (27%), Positives = 20/33 (60%)
 Frame = -2

Query: 784 RGVEEDWLSARNYCRQRCMDLVSLETSDENEWV 686
           R  +++WL+AR +C     DL ++   ++ +W+
Sbjct: 62  RAGDQNWLTAREHCLSLNADLAAIRNVEQLDWI 94


>U00052-1|AAK95880.2|  308|Caenorhabditis elegans Hypothetical
           protein K02F3.5 protein.
          Length = 308

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = -2

Query: 496 GKPQPDNRELIQGGASEHCVAILNNFYNDGVHWHDVACHHRKPFVCEE 353
           GK QPDN+E      +E+CV +     +    W D  C   +PFVC++
Sbjct: 269 GKKQPDNQE-----HNENCVEV-----DHSGQWTDKLCIITRPFVCKK 306


>AL023821-1|CAA19438.2|  355|Caenorhabditis elegans Hypothetical
           protein Y102A5B.2 protein.
          Length = 355

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 9/26 (34%), Positives = 20/26 (76%)
 Frame = -2

Query: 757 ARNYCRQRCMDLVSLETSDENEWVKA 680
           A+  C+ RC +LVS+ +++EN ++++
Sbjct: 253 AQEICKTRCANLVSISSANENRFIRS 278


>Z84574-8|CAE54891.1|  921|Caenorhabditis elegans Hypothetical
           protein F33E2.2b protein.
          Length = 921

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = -2

Query: 544 PTTNRQQNDWSEGGGIGKPQPDNRELIQGGASEHCVAILNNFYNDGV 404
           P  +R+Q +   G   G P P N     G AS+     LN+FY DG+
Sbjct: 51  PIQHREQANAEFGQKEGSPDPKNMVAATGNASK---PSLNSFYADGL 94


>Z84574-7|CAB06544.3|  928|Caenorhabditis elegans Hypothetical
           protein F33E2.2a protein.
          Length = 928

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = -2

Query: 544 PTTNRQQNDWSEGGGIGKPQPDNRELIQGGASEHCVAILNNFYNDGV 404
           P  +R+Q +   G   G P P N     G AS+     LN+FY DG+
Sbjct: 51  PIQHREQANAEFGQKEGSPDPKNMVAATGNASK---PSLNSFYADGL 94


>Z84574-1|CAE54890.1|  577|Caenorhabditis elegans Hypothetical
           protein F33E2.2c protein.
          Length = 577

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = -2

Query: 544 PTTNRQQNDWSEGGGIGKPQPDNRELIQGGASEHCVAILNNFYNDGV 404
           P  +R+Q +   G   G P P N     G AS+     LN+FY DG+
Sbjct: 51  PIQHREQANAEFGQKEGSPDPKNMVAATGNASK---PSLNSFYADGL 94


>Z82052-3|CAB04826.1|  363|Caenorhabditis elegans Hypothetical
           protein T25E12.8 protein.
          Length = 363

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 8/27 (29%), Positives = 20/27 (74%)
 Frame = -2

Query: 763 LSARNYCRQRCMDLVSLETSDENEWVK 683
           + A+ +C  +C +LVS+ +++EN +++
Sbjct: 261 VEAQRFCNTKCANLVSIHSANENRFIQ 287


>AL022593-4|CAE54889.1|  921|Caenorhabditis elegans Hypothetical
           protein F33E2.2b protein.
          Length = 921

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = -2

Query: 544 PTTNRQQNDWSEGGGIGKPQPDNRELIQGGASEHCVAILNNFYNDGV 404
           P  +R+Q +   G   G P P N     G AS+     LN+FY DG+
Sbjct: 51  PIQHREQANAEFGQKEGSPDPKNMVAATGNASK---PSLNSFYADGL 94


>AL022593-3|CAA18635.3|  928|Caenorhabditis elegans Hypothetical
           protein F33E2.2a protein.
          Length = 928

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = -2

Query: 544 PTTNRQQNDWSEGGGIGKPQPDNRELIQGGASEHCVAILNNFYNDGV 404
           P  +R+Q +   G   G P P N     G AS+     LN+FY DG+
Sbjct: 51  PIQHREQANAEFGQKEGSPDPKNMVAATGNASK---PSLNSFYADGL 94


>Z81028-3|CAB02691.1|  545|Caenorhabditis elegans Hypothetical
           protein B0365.6 protein.
          Length = 545

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -2

Query: 745 CRQRCMDLVSLETSDENEWVKARIVQDKIKYI 650
           C+Q C +LVS+ + +EN +V++    +   YI
Sbjct: 186 CQQACGNLVSIHSIEENNYVQSLFTTNAPTYI 217


>U21324-19|AAK68224.1|  407|Caenorhabditis elegans C-type lectin
           protein 6 protein.
          Length = 407

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
 Frame = -2

Query: 817 GYFFSWRDPALRGVEEDWLSARNYCRQRCMDLVSLETSDENEWVKARI--VQDKIKYIWT 644
           G+ +S+  PA       +  A+  C Q C +L S+ +S+EN ++ + I  + +K  YI  
Sbjct: 165 GHCYSFHQPAT------FAQAQVICEQECGNLASIHSSNENRYLSSIISSLSNKNYYIGA 218

Query: 643 S 641
           S
Sbjct: 219 S 219


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,927,863
Number of Sequences: 27780
Number of extensions: 400530
Number of successful extensions: 943
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 901
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 943
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2171433726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)