Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc19b24
(786 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0360 + 22353057-22353691,22354716-22355144,22355233-223553... 237 7e-63
08_02_0753 - 20805672-20805731,20805825-20805941,20806394-208065... 237 1e-62
04_04_0141 + 23079516-23079925,23080006-23080084,23080204-230803... 236 1e-62
03_05_0881 + 28461857-28462263,28462357-28462435,28462798-284629... 231 4e-61
11_06_0036 + 19474848-19475188,19475696-19475774,19475880-194760... 231 6e-61
08_02_1026 + 23743186-23743686,23743793-23743915,23744734-237448... 227 1e-59
01_01_0767 + 5931031-5931281,5931414-5931594,5932020-5932129,593... 135 4e-32
11_06_0360 - 22699524-22699529,22699865-22699899,22700650-227007... 126 2e-29
08_01_0533 + 4625376-4625709,4625799-4625966,4627428-4627689,462... 29 3.2
02_02_0106 + 6814391-6817007,6817086-6817462 29 4.2
08_02_0539 + 18338781-18339592,18347885-18349860,18350030-18350034 28 7.3
04_04_1588 - 34633057-34633824 28 7.3
06_03_1237 + 28602250-28604196 28 9.7
>02_04_0360 +
22353057-22353691,22354716-22355144,22355233-22355311,
22355472-22355594,22356256-22356372,22356636-22356833
Length = 526
Score = 237 bits (580), Expect = 7e-63
Identities = 111/160 (69%), Positives = 132/160 (82%)
Frame = -1
Query: 786 SERKQQMAKEYRXKVEKELREICYDVLGLLDKHLIPKASNPESKVFYLKMKGDYYRYLAE 607
+E + + KEYR K+E EL +IC +L LLD HL+P ++ PESKVFYLKMKGDYYRYLAE
Sbjct: 300 NEDRCTLIKEYRGKIETELSKICDGILKLLDSHLVPSSTAPESKVFYLKMKGDYYRYLAE 359
Query: 606 VATGETRHSVVEDSQKAYQDAFEISKAKMQPTHPIRLGLALNFSVFYYEILNSPDKACQL 427
TG R E++ AY+ A +I+ A++ PTHPIRLGLALNFSVFYYEILNSPD+AC L
Sbjct: 360 FKTGAERKDAAENTMVAYKAAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNL 419
Query: 426 AKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSD 307
AKQAFD+AI+ELDTL+E+SYKDSTLIMQLLRDNLTLWTSD
Sbjct: 420 AKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSD 459
>08_02_0753 -
20805672-20805731,20805825-20805941,20806394-20806516,
20806700-20806778,20806867-20807258
Length = 256
Score = 237 bits (579), Expect = 1e-62
Identities = 115/171 (67%), Positives = 133/171 (77%), Gaps = 1/171 (0%)
Frame = -1
Query: 786 SERKQQMAKEYRXKVEKELREICYDVLGLLDKHLIPKASNPESKVFYLKMKGDYYRYLAE 607
+E + KEYR K+E EL +IC +L LLD HL+P ++ ESKVFYLKMKGDY+RYLAE
Sbjct: 76 NEEHVTLIKEYRGKIEAELSKICDGILKLLDSHLVPSSTAAESKVFYLKMKGDYHRYLAE 135
Query: 606 VATGETRHSVVEDSQKAYQDAFEISKAKMQPTHPIRLGLALNFSVFYYEILNSPDKACQL 427
TG R E + AY+ A +I+ A + PTHPIRLGLALNFSVFYYEILNSPDKAC L
Sbjct: 136 FKTGAERKEAAESTMVAYKAAQDIALADLAPTHPIRLGLALNFSVFYYEILNSPDKACNL 195
Query: 426 AKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSD-TQGDGDEPAE 277
AKQAFD+AI+ELDTL E+SYKDSTLIMQLLRDNLTLWTSD T+ GDE E
Sbjct: 196 AKQAFDEAISELDTLGEESYKDSTLIMQLLRDNLTLWTSDLTEDGGDEVKE 246
>04_04_0141 +
23079516-23079925,23080006-23080084,23080204-23080326,
23081655-23081771,23081886-23081945
Length = 262
Score = 236 bits (578), Expect = 1e-62
Identities = 111/167 (66%), Positives = 134/167 (80%)
Frame = -1
Query: 786 SERKQQMAKEYRXKVEKELREICYDVLGLLDKHLIPKASNPESKVFYLKMKGDYYRYLAE 607
+E + + K+YR K+E EL +IC +L LL+ HL+P ++ PESKVFYLKMKGDYYRYLAE
Sbjct: 82 NEDRVTLIKDYRGKIETELTKICDGILKLLESHLVPSSTAPESKVFYLKMKGDYYRYLAE 141
Query: 606 VATGETRHSVVEDSQKAYQDAFEISKAKMQPTHPIRLGLALNFSVFYYEILNSPDKACQL 427
TG R E++ AY+ A +I+ A++ PTHPIRLGLALNFSVFYYEILNSPD+AC L
Sbjct: 142 FKTGAERKDAAENTMVAYKAAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNL 201
Query: 426 AKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDTQGDGDE 286
AKQAFD+AI+ELDTL+E+SYKDSTLIMQLLRDNLTLWTSD D E
Sbjct: 202 AKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDISEDTAE 248
>03_05_0881 +
28461857-28462263,28462357-28462435,28462798-28462920,
28463632-28463748,28463861-28463917
Length = 260
Score = 231 bits (566), Expect = 4e-61
Identities = 110/159 (69%), Positives = 127/159 (79%)
Frame = -1
Query: 762 KEYRXKVEKELREICYDVLGLLDKHLIPKASNPESKVFYLKMKGDYYRYLAEVATGETRH 583
KEYR ++E EL +IC +L LLD HL+P A+ ESKVFYLKMKGDY+RYLAE +G R
Sbjct: 89 KEYRSRIETELSKICDGILKLLDSHLVPSATAAESKVFYLKMKGDYHRYLAEFKSGAERK 148
Query: 582 SVVEDSQKAYQDAFEISKAKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQAFDDA 403
E++ AY+ A +I+ A + THPIRLGLALNFSVFYYEILNSPD+AC LAKQAFDDA
Sbjct: 149 EAAENTLVAYKSAQDIALADLPTTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDDA 208
Query: 402 IAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDTQGDGDE 286
IAELDTL E+SYKDSTLIMQLLRDNLTLWTSD DG +
Sbjct: 209 IAELDTLGEESYKDSTLIMQLLRDNLTLWTSDNAEDGGD 247
>11_06_0036 +
19474848-19475188,19475696-19475774,19475880-19476002,
19476970-19477086,19477169-19477228
Length = 239
Score = 231 bits (564), Expect = 6e-61
Identities = 107/159 (67%), Positives = 125/159 (78%)
Frame = -1
Query: 762 KEYRXKVEKELREICYDVLGLLDKHLIPKASNPESKVFYLKMKGDYYRYLAEVATGETRH 583
+ YR K+E EL IC +L LLD HL+P A ESKVFYLKMKGDY+RYLAE +G+ R
Sbjct: 67 RSYRGKIEAELARICDGILALLDSHLVPSAGAAESKVFYLKMKGDYHRYLAEFKSGDERK 126
Query: 582 SVVEDSQKAYQDAFEISKAKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQAFDDA 403
E + AY+ A +I+ A + PTHPIRLGLALNFSVFYYEILNSPD+AC LAKQAFD+A
Sbjct: 127 QAAESTMNAYKAAQDIALADLAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEA 186
Query: 402 IAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDTQGDGDE 286
I+ELD+L E+SYKDSTLIMQLLRDNLTLWTSD DG +
Sbjct: 187 ISELDSLGEESYKDSTLIMQLLRDNLTLWTSDANDDGGD 225
>08_02_1026 +
23743186-23743686,23743793-23743915,23744734-23744850,
23744948-23745001
Length = 264
Score = 227 bits (554), Expect = 1e-59
Identities = 107/160 (66%), Positives = 127/160 (79%)
Frame = -1
Query: 765 AKEYRXKVEKELREICYDVLGLLDKHLIPKASNPESKVFYLKMKGDYYRYLAEVATGETR 586
A+ YR +VE EL IC +L LLD+ L+P A+ ++KVFYLKMKGDY+RYLAE TG R
Sbjct: 93 ARSYRARVEAELSNICAGILRLLDERLVPAAAAVDAKVFYLKMKGDYHRYLAEFKTGAER 152
Query: 585 HSVVEDSQKAYQDAFEISKAKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQAFDD 406
+ + AYQ A +I+ ++ PTHPIRLGLALNFSVFYYEILNSPD+AC LAKQAFD+
Sbjct: 153 KDAADATLAAYQAAQDIAMKELSPTHPIRLGLALNFSVFYYEILNSPDRACTLAKQAFDE 212
Query: 405 AIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDTQGDGDE 286
AI+ELDTL E+SYKDSTLIMQLLRDNLTLWTSD Q DG +
Sbjct: 213 AISELDTLGEESYKDSTLIMQLLRDNLTLWTSDMQDDGGD 252
>01_01_0767 +
5931031-5931281,5931414-5931594,5932020-5932129,
5932212-5932360,5932686-5932738,5933168-5933260
Length = 278
Score = 135 bits (326), Expect = 4e-32
Identities = 79/187 (42%), Positives = 107/187 (57%), Gaps = 15/187 (8%)
Frame = -1
Query: 783 ERKQQMAKEYRXKVEKELREICYDVLGLLDK-----HLIPKASNPESKVFYLKMKGDYYR 619
E + EYR KVE E+ +IC DV+ ++DK + + K+ ++ + Y
Sbjct: 54 ESHVRQTAEYRRKVEAEMDKICCDVINIIDKKGDYYRYLAEFKTGTEKIEVSELSLNAYE 113
Query: 618 ----------YLAEVATGETRHSVVEDSQKAYQDAFEISKAKMQPTHPIRLGLALNFSVF 469
+L T ++ + A + ++ + PT PIRLGLALN SVF
Sbjct: 114 ACDPFFIFNLFLFSQVTCFIEFTIYQ--VLVVYTASKTAQTDLTPTDPIRLGLALNISVF 171
Query: 468 YYEILNSPDKACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDTQGDGD 289
Y EI+NSPDKACQLAK AFD+A+AEL +L+E++YKDSTLIMQLLRDNL LW SD D D
Sbjct: 172 YCEIMNSPDKACQLAKNAFDEAVAELPSLSEENYKDSTLIMQLLRDNLALWNSDMADDAD 231
Query: 288 EPAEGGD 268
+ E D
Sbjct: 232 DIRERTD 238
>11_06_0360 -
22699524-22699529,22699865-22699899,22700650-22700792,
22701165-22701220,22701367-22701454,22702737-22703037,
22704365-22704428
Length = 230
Score = 126 bits (305), Expect = 2e-29
Identities = 68/153 (44%), Positives = 99/153 (64%)
Frame = -1
Query: 756 YRXKVEKELREICYDVLGLLDKHLIPKASNPESKVFYLKMKGDYYRYLAEVATGETRHSV 577
Y+ KVE ELR +C +VL ++ H +P A++ E+ VF+ KMKGDYYRYLAE +TG + +
Sbjct: 83 YKKKVEDELRAVCNEVLSIIAIHCLPLANSGENVVFFYKMKGDYYRYLAEFSTGTEKKAA 142
Query: 576 VEDSQKAYQDAFEISKAKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQAFDDAIA 397
+ S AYQ A+ ++ FS+ EI+NSP++A Q+AKQA D+A A
Sbjct: 143 TDQSLMAYQ-AWPCAQL---------------FSLL--EIMNSPERASQVAKQALDEATA 184
Query: 396 ELDTLNEDSYKDSTLIMQLLRDNLTLWTSDTQG 298
E+++ + YKDS L+MQLL++NL LWTS+ G
Sbjct: 185 EINSAGVEGYKDSMLMMQLLKENLALWTSELTG 217
>08_01_0533 +
4625376-4625709,4625799-4625966,4627428-4627689,
4627787-4627934,4628453-4628496,4628812-4628859,
4629245-4630509,4630741-4630839,4630916-4631097,
4631186-4631246,4631488-4631725,4631818-4631971,
4632042-4632335
Length = 1098
Score = 29.5 bits (63), Expect = 3.2
Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Frame = -1
Query: 477 SVFYYEILNSPDKACQLAKQAFDDAIAEL-DTLNEDSYKDSTLIMQLLRD-NLTLWTSDT 304
S Y + PD + K++FD+ + E + +Y S + ++ D LWT +
Sbjct: 676 SFLTYPSMKVPDNFIYIHKRSFDECMVECRSNCSCVAYAYSNISSGIIDDTRCLLWTGEL 735
Query: 303 QGDGDEPAEGGDN*YLAA 250
D ++ +GG+N Y+ A
Sbjct: 736 I-DMEKVTQGGENLYIRA 752
>02_02_0106 + 6814391-6817007,6817086-6817462
Length = 997
Score = 29.1 bits (62), Expect = 4.2
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = -3
Query: 217 CL*ENE*HSRTSSGAVSSPKPTRAVACKNVKSRSQRTFPFRLKL-NVVSSLTVL 59
CL +N H S +SSP PT C N+K F KL N ++SL L
Sbjct: 93 CLLKNLTHLDVSYNNISSPFPTMLYNCSNLKYLDLSNNAFAGKLPNDINSLPAL 146
>08_02_0539 + 18338781-18339592,18347885-18349860,18350030-18350034
Length = 930
Score = 28.3 bits (60), Expect = 7.3
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 5/40 (12%)
Frame = -1
Query: 735 ELREICYDVLGLLDKHLIPKASNPES-----KVFYLKMKG 631
+LRE+ YD+ LD+ L+ A+ P S K+ K+KG
Sbjct: 71 DLRELSYDMEDSLDRFLVKSAAEPGSCKKLFKILLTKIKG 110
>04_04_1588 - 34633057-34633824
Length = 255
Score = 28.3 bits (60), Expect = 7.3
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +1
Query: 229 KCVCWGECGEILVVAALGRLVAIALSV*RPK 321
+CVCW +++ ALG I +V +PK
Sbjct: 68 RCVCWTLLAVLVLAVALGATAGILYAVFKPK 98
>06_03_1237 + 28602250-28604196
Length = 648
Score = 27.9 bits (59), Expect = 9.7
Identities = 17/72 (23%), Positives = 36/72 (50%)
Frame = -1
Query: 705 GLLDKHLIPKASNPESKVFYLKMKGDYYRYLAEVATGETRHSVVEDSQKAYQDAFEISKA 526
GL+D + + SKVFY + + Y Y + +A G H ++ +++ +++A
Sbjct: 314 GLVDMYAKCGLIDEASKVFYGMQEKNVYTYSSMIA-GLASHGRASEAIALFKEM--VNRA 370
Query: 525 KMQPTHPIRLGL 490
++P H +G+
Sbjct: 371 NVEPNHVTFIGV 382
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,744,695
Number of Sequences: 37544
Number of extensions: 400854
Number of successful extensions: 1158
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1158
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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