Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc19b24
(786 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z66564-2|CAA91474.1| 248|Caenorhabditis elegans Hypothetical pr... 293 1e-79
Z73910-2|CAA98138.1| 248|Caenorhabditis elegans Hypothetical pr... 272 2e-73
U05038-1|AAA61872.1| 248|Caenorhabditis elegans 14-3-3 protein ... 270 6e-73
Z66564-5|CAC42300.2| 198|Caenorhabditis elegans Hypothetical pr... 214 5e-56
Z73910-3|CAA98135.1| 125|Caenorhabditis elegans Hypothetical pr... 83 2e-16
Z92779-4|CAE11294.1| 1816|Caenorhabditis elegans Hypothetical pr... 30 1.6
Z92779-3|CAD90173.2| 2155|Caenorhabditis elegans Hypothetical pr... 30 1.6
Z92779-2|CAD56561.2| 1475|Caenorhabditis elegans Hypothetical pr... 30 1.6
Z92779-1|CAB07173.1| 1813|Caenorhabditis elegans Hypothetical pr... 30 1.6
Z79694-11|CAE11299.1| 1816|Caenorhabditis elegans Hypothetical p... 30 1.6
Z79694-10|CAD90170.2| 2155|Caenorhabditis elegans Hypothetical p... 30 1.6
Z79694-9|CAB01966.1| 1813|Caenorhabditis elegans Hypothetical pr... 30 1.6
Z73912-7|CAE11317.1| 1816|Caenorhabditis elegans Hypothetical pr... 30 1.6
Z73912-6|CAD90190.2| 2155|Caenorhabditis elegans Hypothetical pr... 30 1.6
Z73912-5|CAD56619.2| 1475|Caenorhabditis elegans Hypothetical pr... 30 1.6
Z73912-4|CAA98147.1| 1813|Caenorhabditis elegans Hypothetical pr... 30 1.6
M62830-1|AAA93094.1| 1815|Caenorhabditis elegans UNC-13 protein. 30 1.6
Z99281-35|CAB16518.2| 524|Caenorhabditis elegans Hypothetical p... 28 8.7
Z81466-5|CAE45043.1| 1309|Caenorhabditis elegans Hypothetical pr... 28 8.7
Z81466-4|CAB03868.2| 1311|Caenorhabditis elegans Hypothetical pr... 28 8.7
>Z66564-2|CAA91474.1| 248|Caenorhabditis elegans Hypothetical
protein F52D10.3a protein.
Length = 248
Score = 293 bits (718), Expect = 1e-79
Identities = 142/175 (81%), Positives = 156/175 (89%), Gaps = 2/175 (1%)
Frame = -1
Query: 786 SERKQQMAKEYRXKVEKELREICYDVLGLLDKHLIPKASNPESKVFYLKMKGDYYRYLAE 607
SE+KQQMAKEYR KVEKELR+IC DVL LLDK LIPKA ESKVFYLKMKGDYYRYLAE
Sbjct: 74 SEKKQQMAKEYREKVEKELRDICQDVLNLLDKFLIPKAGAAESKVFYLKMKGDYYRYLAE 133
Query: 606 VATGETRHSVVEDSQKAYQDAFEISKAKMQPTHPIRLGLALNFSVFYYEILNSPDKACQL 427
VA+G+ R+SVVE SQ++YQ+AF+I+K KMQPTHPIRLGLALNFSVF+YEILN+PDKACQL
Sbjct: 134 VASGDDRNSVVEKSQQSYQEAFDIAKDKMQPTHPIRLGLALNFSVFFYEILNAPDKACQL 193
Query: 426 AKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDTQGDGDE--PAEGGD 268
AKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSD D + EGG+
Sbjct: 194 AKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDAATDDTDANETEGGN 248
>Z73910-2|CAA98138.1| 248|Caenorhabditis elegans Hypothetical
protein M117.2 protein.
Length = 248
Score = 272 bits (667), Expect = 2e-73
Identities = 136/171 (79%), Positives = 149/171 (87%)
Frame = -1
Query: 786 SERKQQMAKEYRXKVEKELREICYDVLGLLDKHLIPKASNPESKVFYLKMKGDYYRYLAE 607
SE+KQQ+AKEYR KVE+EL +IC DVL LLD+ LI KA ESKVFYLKMKGDYYRYLAE
Sbjct: 74 SEKKQQLAKEYRVKVEQELNDICQDVLKLLDEFLIVKAGAAESKVFYLKMKGDYYRYLAE 133
Query: 606 VATGETRHSVVEDSQKAYQDAFEISKAKMQPTHPIRLGLALNFSVFYYEILNSPDKACQL 427
VA+ E R +VVE SQKAYQ+A +I+K KMQPTHPIRLGLALNFSVFYYEILN+P+ ACQL
Sbjct: 134 VAS-EDRAAVVEKSQKAYQEALDIAKDKMQPTHPIRLGLALNFSVFYYEILNTPEHACQL 192
Query: 426 AKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDTQGDGDEPAEG 274
AKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSD G D+ EG
Sbjct: 193 AKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDV-GAEDQEQEG 242
>U05038-1|AAA61872.1| 248|Caenorhabditis elegans 14-3-3 protein
protein.
Length = 248
Score = 270 bits (663), Expect = 6e-73
Identities = 135/171 (78%), Positives = 148/171 (86%)
Frame = -1
Query: 786 SERKQQMAKEYRXKVEKELREICYDVLGLLDKHLIPKASNPESKVFYLKMKGDYYRYLAE 607
SE+KQQ+AKEYR KVE+EL +IC DVL LLD+ LI KA ESK FYLKMKGDYYRYLAE
Sbjct: 74 SEKKQQLAKEYRVKVEQELNDICQDVLKLLDEFLIVKAGAAESKAFYLKMKGDYYRYLAE 133
Query: 606 VATGETRHSVVEDSQKAYQDAFEISKAKMQPTHPIRLGLALNFSVFYYEILNSPDKACQL 427
VA+ E R +VVE SQKAYQ+A +I+K KMQPTHPIRLGLALNFSVFYYEILN+P+ ACQL
Sbjct: 134 VAS-EDRAAVVEKSQKAYQEALDIAKDKMQPTHPIRLGLALNFSVFYYEILNTPEHACQL 192
Query: 426 AKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDTQGDGDEPAEG 274
AKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSD G D+ EG
Sbjct: 193 AKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDV-GAEDQEQEG 242
>Z66564-5|CAC42300.2| 198|Caenorhabditis elegans Hypothetical
protein F52D10.3b protein.
Length = 198
Score = 214 bits (523), Expect = 5e-56
Identities = 101/123 (82%), Positives = 113/123 (91%)
Frame = -1
Query: 786 SERKQQMAKEYRXKVEKELREICYDVLGLLDKHLIPKASNPESKVFYLKMKGDYYRYLAE 607
SE+KQQMAKEYR KVEKELR+IC DVL LLDK LIPKA ESKVFYLKMKGDYYRYLAE
Sbjct: 74 SEKKQQMAKEYREKVEKELRDICQDVLNLLDKFLIPKAGAAESKVFYLKMKGDYYRYLAE 133
Query: 606 VATGETRHSVVEDSQKAYQDAFEISKAKMQPTHPIRLGLALNFSVFYYEILNSPDKACQL 427
VA+G+ R+SVVE SQ++YQ+AF+I+K KMQPTHPIRLGLALNFSVF+YEILN+PDKACQL
Sbjct: 134 VASGDDRNSVVEKSQQSYQEAFDIAKDKMQPTHPIRLGLALNFSVFFYEILNAPDKACQL 193
Query: 426 AKQ 418
AKQ
Sbjct: 194 AKQ 196
>Z73910-3|CAA98135.1| 125|Caenorhabditis elegans Hypothetical
protein M117.3 protein.
Length = 125
Score = 83.4 bits (197), Expect = 2e-16
Identities = 52/127 (40%), Positives = 70/127 (55%), Gaps = 2/127 (1%)
Frame = -1
Query: 639 MKGDYYRYLAEVATGETRHSVVEDSQKAYQDAFEISKAKMQPTHPIRLGLALNFSVFYYE 460
M D++RYL + R S+ AYQ+A I+K KMQPTHPIRLGLALN S ++
Sbjct: 1 MVADHFRYLVQY-DDINREEHAHKSRIAYQEALGIAKDKMQPTHPIRLGLALNASALNFD 59
Query: 459 ILNSPDKACQLAKQAFDDAIAELDTLNE--DSYKDSTLIMQLLRDNLTLWTSDTQGDGDE 286
+LN P +A ++A+ A D A EL+ + DSY S L +L T + + DG E
Sbjct: 60 VLNLPKEANEIAQSALDSAHRELEKMKSSLDSYDISNLKRARTLYDLLKSTHEQRVDGKE 119
Query: 285 PAEGGDN 265
E DN
Sbjct: 120 -GEEADN 125
>Z92779-4|CAE11294.1| 1816|Caenorhabditis elegans Hypothetical protein
ZK524.2e protein.
Length = 1816
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = -1
Query: 714 DVLGLLDKHLIPK-ASNPESKVFYLKMKGDYYRYLAEVAT 598
D+ L++H K PE Y K+KG Y++Y+A+++T
Sbjct: 1214 DLKMALEEHAQKKRCKTPEYMNLYFKVKGFYFKYVADLST 1253
>Z92779-3|CAD90173.2| 2155|Caenorhabditis elegans Hypothetical protein
ZK524.2d protein.
Length = 2155
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = -1
Query: 714 DVLGLLDKHLIPK-ASNPESKVFYLKMKGDYYRYLAEVAT 598
D+ L++H K PE Y K+KG Y++Y+A+++T
Sbjct: 1553 DLKMALEEHAQKKRCKTPEYMNLYFKVKGFYFKYVADLST 1592
>Z92779-2|CAD56561.2| 1475|Caenorhabditis elegans Hypothetical
protein ZK524.2c protein.
Length = 1475
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = -1
Query: 714 DVLGLLDKHLIPK-ASNPESKVFYLKMKGDYYRYLAEVAT 598
D+ L++H K PE Y K+KG Y++Y+A+++T
Sbjct: 873 DLKMALEEHAQKKRCKTPEYMNLYFKVKGFYFKYVADLST 912
>Z92779-1|CAB07173.1| 1813|Caenorhabditis elegans Hypothetical protein
ZK524.2a protein.
Length = 1813
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = -1
Query: 714 DVLGLLDKHLIPK-ASNPESKVFYLKMKGDYYRYLAEVAT 598
D+ L++H K PE Y K+KG Y++Y+A+++T
Sbjct: 1211 DLKMALEEHAQKKRCKTPEYMNLYFKVKGFYFKYVADLST 1250
>Z79694-11|CAE11299.1| 1816|Caenorhabditis elegans Hypothetical
protein ZK524.2e protein.
Length = 1816
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = -1
Query: 714 DVLGLLDKHLIPK-ASNPESKVFYLKMKGDYYRYLAEVAT 598
D+ L++H K PE Y K+KG Y++Y+A+++T
Sbjct: 1214 DLKMALEEHAQKKRCKTPEYMNLYFKVKGFYFKYVADLST 1253
>Z79694-10|CAD90170.2| 2155|Caenorhabditis elegans Hypothetical
protein ZK524.2d protein.
Length = 2155
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = -1
Query: 714 DVLGLLDKHLIPK-ASNPESKVFYLKMKGDYYRYLAEVAT 598
D+ L++H K PE Y K+KG Y++Y+A+++T
Sbjct: 1553 DLKMALEEHAQKKRCKTPEYMNLYFKVKGFYFKYVADLST 1592
>Z79694-9|CAB01966.1| 1813|Caenorhabditis elegans Hypothetical protein
ZK524.2a protein.
Length = 1813
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = -1
Query: 714 DVLGLLDKHLIPK-ASNPESKVFYLKMKGDYYRYLAEVAT 598
D+ L++H K PE Y K+KG Y++Y+A+++T
Sbjct: 1211 DLKMALEEHAQKKRCKTPEYMNLYFKVKGFYFKYVADLST 1250
>Z73912-7|CAE11317.1| 1816|Caenorhabditis elegans Hypothetical protein
ZK524.2e protein.
Length = 1816
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = -1
Query: 714 DVLGLLDKHLIPK-ASNPESKVFYLKMKGDYYRYLAEVAT 598
D+ L++H K PE Y K+KG Y++Y+A+++T
Sbjct: 1214 DLKMALEEHAQKKRCKTPEYMNLYFKVKGFYFKYVADLST 1253
>Z73912-6|CAD90190.2| 2155|Caenorhabditis elegans Hypothetical protein
ZK524.2d protein.
Length = 2155
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = -1
Query: 714 DVLGLLDKHLIPK-ASNPESKVFYLKMKGDYYRYLAEVAT 598
D+ L++H K PE Y K+KG Y++Y+A+++T
Sbjct: 1553 DLKMALEEHAQKKRCKTPEYMNLYFKVKGFYFKYVADLST 1592
>Z73912-5|CAD56619.2| 1475|Caenorhabditis elegans Hypothetical
protein ZK524.2c protein.
Length = 1475
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = -1
Query: 714 DVLGLLDKHLIPK-ASNPESKVFYLKMKGDYYRYLAEVAT 598
D+ L++H K PE Y K+KG Y++Y+A+++T
Sbjct: 873 DLKMALEEHAQKKRCKTPEYMNLYFKVKGFYFKYVADLST 912
>Z73912-4|CAA98147.1| 1813|Caenorhabditis elegans Hypothetical protein
ZK524.2a protein.
Length = 1813
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = -1
Query: 714 DVLGLLDKHLIPK-ASNPESKVFYLKMKGDYYRYLAEVAT 598
D+ L++H K PE Y K+KG Y++Y+A+++T
Sbjct: 1211 DLKMALEEHAQKKRCKTPEYMNLYFKVKGFYFKYVADLST 1250
>M62830-1|AAA93094.1| 1815|Caenorhabditis elegans UNC-13 protein.
Length = 1815
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = -1
Query: 714 DVLGLLDKHLIPK-ASNPESKVFYLKMKGDYYRYLAEVAT 598
D+ L++H K PE Y K+KG Y++Y+A+++T
Sbjct: 1214 DLKMALEEHAQKKRCKTPEYMNLYFKVKGFYFKYVADLST 1253
>Z99281-35|CAB16518.2| 524|Caenorhabditis elegans Hypothetical
protein Y57G11C.17 protein.
Length = 524
Score = 27.9 bits (59), Expect = 8.7
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = +1
Query: 595 SCGHFCKV-PVVISFHFEVKHFTFWIT 672
S G C V VV+++H +HF FW+T
Sbjct: 378 SLGALCAVFGVVLAWHGTRRHFIFWVT 404
>Z81466-5|CAE45043.1| 1309|Caenorhabditis elegans Hypothetical protein
C09H6.1b protein.
Length = 1309
Score = 27.9 bits (59), Expect = 8.7
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +1
Query: 595 SCGHFCKVPVVISFHFEVKHFT 660
SC +FC V ++FH V H T
Sbjct: 1263 SCEYFCHVSSELAFHMSVHHLT 1284
>Z81466-4|CAB03868.2| 1311|Caenorhabditis elegans Hypothetical protein
C09H6.1a protein.
Length = 1311
Score = 27.9 bits (59), Expect = 8.7
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +1
Query: 595 SCGHFCKVPVVISFHFEVKHFT 660
SC +FC V ++FH V H T
Sbjct: 1265 SCEYFCHVSSELAFHMSVHHLT 1286
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,062,221
Number of Sequences: 27780
Number of extensions: 348629
Number of successful extensions: 1085
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1029
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1083
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1903721438
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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