Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc19b22
(810 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0343 + 28132348-28132878,28133256-28133366,28133477-281335... 228 3e-60
02_01_0316 + 2125283-2125687,2125768-2125881,2125986-2126099,212... 221 7e-58
01_01_0367 + 2872650-2873045,2873800-2873940,2874255-2874364,287... 76 4e-14
03_05_0168 - 21466431-21466445,21467053-21467160,21467222-214673... 50 2e-06
01_04_0038 - 15339047-15339230,15339683-15339741,15340031-153401... 47 2e-05
07_03_0406 + 17785046-17785408,17786411-17786479,17786764-177868... 42 8e-04
02_05_0003 - 24867053-24867145,24867264-24867437,24867673-248677... 28 0.059
07_01_0282 - 2070027-2070041,2074763-2075062,2075154-2075722,207... 33 0.36
04_03_0601 - 17875540-17875776,17876611-17876736,17877700-178777... 32 0.47
04_03_0767 + 19389337-19389381,19390586-19390643,19390720-193907... 31 1.1
01_06_0956 - 33343503-33344086,33344225-33344384 31 1.4
07_03_1142 + 24287674-24288357,24291451-24292137 30 1.9
03_05_0883 + 28483429-28484385,28485090-28485398 29 3.3
07_03_1697 - 28795521-28797328,28797430-28797550 29 5.8
09_06_0370 - 22610441-22610569,22610659-22611060,22611141-226111... 28 7.6
03_02_0171 + 6126685-6127107,6127237-6127581,6127701-6127997,612... 28 7.6
>02_05_0343 +
28132348-28132878,28133256-28133366,28133477-28133590,
28134077-28134367,28134447-28134557,28134658-28134711,
28135587-28135666,28135749-28135864,28136491-28136605,
28136740-28136788,28136984-28137106
Length = 564
Score = 228 bits (558), Expect = 3e-60
Identities = 110/201 (54%), Positives = 139/201 (69%)
Frame = -1
Query: 807 ARPEKSDEPEALKIRVNQDTRLDNRVLDLRTPANQAVFRIEAGVCRLFRDILTKKGFVEI 628
A EK+++ +RV QDTRL+ R +DLRTPANQA+FRI+ V FR+ K FV I
Sbjct: 207 AEIEKAEQAGEKLVRVGQDTRLNYRAIDLRTPANQAIFRIQCQVENKFREYFLSKNFVGI 266
Query: 627 HTPKIISAASEGGANVFTVSYFKSSAYLAQSPQLYKQMAIAADFDKVFTVGAVFRAEDSN 448
H+PK+I+ +SEGGA VF + Y A LAQSPQLYKQMAI F++VF VG VFRAE+SN
Sbjct: 267 HSPKLIAGSSEGGAAVFKLQYNGQPACLAQSPQLYKQMAICGGFERVFEVGPVFRAENSN 326
Query: 447 THRHLTEFVGLDLEMSFKQHYHEVLDTIGGTFTEMFRGLRDQFASEIATVGQQYRVEPFK 268
THRHL EFVGLD EM K+HY EV D I G F +F+ L + E+ T+ +QY EP K
Sbjct: 327 THRHLCEFVGLDAEMEIKEHYFEVCDIIDGLFVAIFKHLNENCKKELETINRQYPFEPLK 386
Query: 267 FLDPPLKLEFPQAVQMLKEAG 205
+L+ LKL + + +QMLKEAG
Sbjct: 387 YLEKTLKLTYEEGIQMLKEAG 407
>02_01_0316 +
2125283-2125687,2125768-2125881,2125986-2126099,
2126271-2126561,2126658-2126768,2127317-2127370,
2127555-2127634,2127912-2128027,2128141-2128382
Length = 508
Score = 221 bits (539), Expect = 7e-58
Identities = 103/188 (54%), Positives = 132/188 (70%)
Frame = -1
Query: 768 IRVNQDTRLDNRVLDLRTPANQAVFRIEAGVCRLFRDILTKKGFVEIHTPKIISAASEGG 589
+ V QD RLD RV+DLRTPANQA+FR++ + +FR +L +GFV IHTPK+I +SEGG
Sbjct: 179 VHVGQDKRLDFRVIDLRTPANQAIFRVQCEIENIFRQVLLSEGFVGIHTPKLIGGSSEGG 238
Query: 588 ANVFTVSYFKSSAYLAQSPQLYKQMAIAADFDKVFTVGAVFRAEDSNTHRHLTEFVGLDL 409
A VF + Y A LAQSPQL+KQMAI F++VF VG VFRAEDSNTHRHL EFVGLD+
Sbjct: 239 AAVFKLDYNGQPACLAQSPQLHKQMAICGGFERVFEVGPVFRAEDSNTHRHLCEFVGLDM 298
Query: 408 EMSFKQHYHEVLDTIGGTFTEMFRGLRDQFASEIATVGQQYRVEPFKFLDPPLKLEFPQA 229
EM+ K HY EV D + F MF L A E+ + +QY +P K+L L++E+ +
Sbjct: 299 EMAIKGHYSEVCDVVDRLFVAMFDHLNKNCAKELEAINRQYPFKPLKYLPKTLRIEYDEG 358
Query: 228 VQMLKEAG 205
++MLKEAG
Sbjct: 359 IRMLKEAG 366
>01_01_0367 +
2872650-2873045,2873800-2873940,2874255-2874364,
2875279-2875390,2875959-2876030,2876605-2876696,
2877116-2877236,2877712-2877834,2877935-2878130,
2878221-2878408,2878553-2878624,2879336-2879434,
2880027-2880107,2880337-2880405,2880730-2880787,
2881181-2881347
Length = 698
Score = 75.8 bits (178), Expect = 4e-14
Identities = 46/131 (35%), Positives = 69/131 (52%), Gaps = 3/131 (2%)
Frame = -1
Query: 780 EALKIRVNQDTRLDNRVLDLRTPANQAVFRIEAGVCRLFRDILTKK-GFVEIHTPKIISA 604
+ +K + ++ RL RVLDLR P Q+ R+ V + R L + FVEI TP + +
Sbjct: 203 DTVKEKFPEEIRLRFRVLDLRRPQMQSNLRLRHNVVKHIRRYLEDRHDFVEIETPVLSKS 262
Query: 603 ASEGGANVFTVSYFKSSAYLA--QSPQLYKQMAIAADFDKVFTVGAVFRAEDSNTHRHLT 430
EG + S + + A QSPQL+KQM + + F+K + + FR ED R
Sbjct: 263 TPEGARDYLVPSRVQPGMFYALPQSPQLFKQMLMVSGFEKYYQIARCFRDEDLRADRQ-P 321
Query: 429 EFVGLDLEMSF 397
EF LD+E++F
Sbjct: 322 EFTQLDMEIAF 332
>03_05_0168 -
21466431-21466445,21467053-21467160,21467222-21467365,
21467778-21467846,21467928-21468071,21468409-21468565,
21468671-21468767,21469015-21469297,21469382-21469507,
21470098-21470178,21471990-21472072,21472393-21472478,
21473329-21473422,21473516-21473681,21473777-21473851,
21474082-21474157,21474259-21474347
Length = 630
Score = 50.4 bits (115), Expect = 2e-06
Identities = 39/184 (21%), Positives = 77/184 (41%), Gaps = 3/184 (1%)
Frame = -1
Query: 759 NQDTRLDNRVLDLRTPAN-QAVFRIEAGVCRLFRDILTKKGFVEIHTPKIISAASEGGAN 583
+Q+TR R LDL + +F+ + V R L F+E+ TP + A A
Sbjct: 249 DQETRYRQRYLDLMVNHEVRHIFKTRSKVVSFIRKFLDGLDFLEVETPMMNMIAGGAAAR 308
Query: 582 VFTVSY--FKSSAYLAQSPQLYKQMAIAADFDKVFTVGAVFRAEDSNTHRHLTEFVGLDL 409
F + Y+ +P+LY + + D+V+ +G FR E + H EF +
Sbjct: 309 PFVTHHNELNMRLYMRIAPELYLKELVVGGLDRVYEIGKQFRNEGIDL-THNPEFTTCEF 367
Query: 408 EMSFKQHYHEVLDTIGGTFTEMFRGLRDQFASEIATVGQQYRVEPFKFLDPPLKLEFPQA 229
M++ Y+++++ + M + L + + G + F P K++ +
Sbjct: 368 YMAYAD-YNDLIELTETMLSGMVKELTGGYKIKYHANGVEKPPIEIDFTPPFRKIDMIEE 426
Query: 228 VQML 217
++ +
Sbjct: 427 LEAM 430
>01_04_0038 -
15339047-15339230,15339683-15339741,15340031-15340160,
15340248-15340498,15340632-15341225,15342050-15342511
Length = 559
Score = 46.8 bits (106), Expect = 2e-05
Identities = 25/67 (37%), Positives = 37/67 (55%)
Frame = -1
Query: 597 EGGANVFTVSYFKSSAYLAQSPQLYKQMAIAADFDKVFTVGAVFRAEDSNTHRHLTEFVG 418
+ G + +FK A+L S QL + A V+T G FRAE+S+T RHL EF
Sbjct: 283 DDGTVAYENDFFKRQAFLTVSGQLQVE-TYACALSSVYTFGPTFRAENSHTSRHLAEFWM 341
Query: 417 LDLEMSF 397
++ E++F
Sbjct: 342 VEPEIAF 348
Score = 30.3 bits (65), Expect = 1.9
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Frame = -1
Query: 732 VLDLRTPANQ--AVFRIEAGVCRLFRDILTKKGFVEIHTPKIISAASEGGANVFTVSYFK 559
V+ LR+ N AV RI + + GF+ +HTP I ++ EG +F V+
Sbjct: 145 VVHLRSRTNTIGAVARIRHQLACATHRFFDENGFLYVHTPIITTSDCEGAGEMFQVTTLF 204
Query: 558 SSA 550
S A
Sbjct: 205 SHA 207
>07_03_0406 +
17785046-17785408,17786411-17786479,17786764-17786868,
17787297-17787346,17787363-17787489,17788084-17788221,
17788863-17788940,17789141-17789218,17789318-17789386,
17789720-17789803,17789895-17789981,17790364-17790459,
17790541-17790615,17790762-17790888,17791027-17791142
Length = 553
Score = 41.5 bits (93), Expect = 8e-04
Identities = 26/65 (40%), Positives = 36/65 (55%)
Frame = -1
Query: 618 KIISAASEGGANVFTVSYFKSSAYLAQSPQLYKQMAIAADFDKVFTVGAVFRAEDSNTHR 439
K I + +G + ++ +F A+L S QL + A D V+T G FRAE+SNT R
Sbjct: 296 KDIPSTKDGRVD-WSQDFFCKPAFLTVSGQLNGETYATALSD-VYTFGPTFRAENSNTSR 353
Query: 438 HLTEF 424
HL EF
Sbjct: 354 HLAEF 358
>02_05_0003 -
24867053-24867145,24867264-24867437,24867673-24867735,
24868108-24868198,24869579-24869673,24870471-24870668,
24871475-24871648,24872335-24872439,24872645-24872737,
24873688-24873690,24874776-24874844,24875208-24875265,
24875810-24875918,24876603-24876714,24877992-24878204,
24878214-24878546
Length = 660
Score = 27.9 bits (59), Expect(2) = 0.059
Identities = 11/43 (25%), Positives = 24/43 (55%)
Frame = -1
Query: 516 MAIAADFDKVFTVGAVFRAEDSNTHRHLTEFVGLDLEMSFKQH 388
+ + +KV+ +G +FR E +T RH EF +++ ++ +
Sbjct: 297 LQVVGGLEKVYEIGRIFRNEGIST-RHNPEFTTIEMYEAYSDY 338
Score = 26.2 bits (55), Expect(2) = 0.059
Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Frame = -1
Query: 753 DTRLDNRVLDL-RTPANQAVFRIEAGVCRLFRDILTKKGFVEIHTP 619
D R R +D+ P VFR A R + GF+E+ TP
Sbjct: 250 DKRYRQRYVDMIANPEVADVFRTRAKAVSEIRKTMESFGFIEVETP 295
>07_01_0282 -
2070027-2070041,2074763-2075062,2075154-2075722,
2075812-2076337
Length = 469
Score = 32.7 bits (71), Expect = 0.36
Identities = 25/69 (36%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
Frame = +3
Query: 147 ASGTWSFESKASRPRRSDTHQLPSASGR-PAETPASGEDPRI*RVPPGTVDPQSLSRRQT 323
AS W+F + ++ PSAS R A T A GEDP PP P S S +
Sbjct: 387 ASDEWNFAVGNMQQQQQQRSMTPSASSRAAAATDADGEDP-----PPPPPHPPSPSAEGS 441
Query: 324 G--PLAPGT 344
P PGT
Sbjct: 442 ASPPTTPGT 450
>04_03_0601 -
17875540-17875776,17876611-17876736,17877700-17877727,
17878131-17878936
Length = 398
Score = 32.3 bits (70), Expect = 0.47
Identities = 25/97 (25%), Positives = 41/97 (42%)
Frame = -1
Query: 621 PKIISAASEGGANVFTVSYFKSSAYLAQSPQLYKQMAIAADFDKVFTVGAVFRAEDSNTH 442
P ++ A +N + SA A+S + + + K F+ G V A +NT
Sbjct: 247 PVVVEWAVRNASNCVEARKNRESAEDAES--VIQSLITLPPVLKAFSDGTV-DAGMANTS 303
Query: 441 RHLTEFVGLDLEMSFKQHYHEVLDTIGGTFTEMFRGL 331
R + E G E +F QH H + +GG + G+
Sbjct: 304 RAMCESTGYFSEFAFHQHQHMLRSVVGGGAARVMLGV 340
>04_03_0767 +
19389337-19389381,19390586-19390643,19390720-19390759,
19390859-19390926,19391007-19391081,19391161-19391216,
19391317-19391361,19391450-19391701,19391787-19391881,
19392395-19392485,19392578-19392688,19392788-19392982,
19393071-19393262
Length = 440
Score = 31.1 bits (67), Expect = 1.1
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Frame = +3
Query: 171 SKASRPRRSDTHQLPSASGRPAETPASGED--PRI*RVPPGTVDPQSLSRRQTGPLAPGT 344
SK++ P ++TH PS P ETP E+ P++ P P+ +T P P
Sbjct: 148 SKSAAP--AETHVAPSEDSTPKETPPKAEETKPKLEEKSPKAEPPKMPLPPKTSPTEPQL 205
Query: 345 SP 350
P
Sbjct: 206 PP 207
>01_06_0956 - 33343503-33344086,33344225-33344384
Length = 247
Score = 30.7 bits (66), Expect = 1.4
Identities = 14/45 (31%), Positives = 19/45 (42%)
Frame = +3
Query: 279 PPGTVDPQSLSRRQTGPLAPGTSP*MCPLWCPGPRGSAA*RTSLG 413
PP + P +R+T P P P+W P P +A R G
Sbjct: 129 PPPLLPPSPRHKRRTAPAPMPLPPAQAPVWSPAPAPAATQRRHSG 173
>07_03_1142 + 24287674-24288357,24291451-24292137
Length = 456
Score = 30.3 bits (65), Expect = 1.9
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Frame = +2
Query: 587 APPSDAADI-IFGVWISTKPFFVRISLKSLQTPASILKTAWLAGVRRSKTRLSSRVSW 757
AP + D+ IFG T + +R +LK L +S L++ LAG RS+ R+++ + W
Sbjct: 9 APTPEVFDVVIFGASGFTGRYVIREALKFLPPSSSPLRSLALAG--RSRDRVAAALRW 64
>03_05_0883 + 28483429-28484385,28485090-28485398
Length = 421
Score = 29.5 bits (63), Expect = 3.3
Identities = 20/54 (37%), Positives = 23/54 (42%)
Frame = +3
Query: 189 RRSDTHQLPSASGRPAETPASGEDPRI*RVPPGTVDPQSLSRRQTGPLAPGTSP 350
RR +LPSAS PA +P S PR P P L + P P T P
Sbjct: 55 RRHHRVRLPSASSSPASSPRSAAAPRAGSDDPDA--PAWLHGLKRRPRTPRTKP 106
>07_03_1697 - 28795521-28797328,28797430-28797550
Length = 642
Score = 28.7 bits (61), Expect = 5.8
Identities = 25/72 (34%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Frame = +3
Query: 129 DGFRSWASGTWSFESKASRPRRSDTHQLPSASGRPAETPASGEDPRI*R--VPPGTVDPQ 302
D S A G S E + PRR D +LP +S +TP S P + + P T P
Sbjct: 183 DQTESDAEGKKSSEETSQSPRR-DVVELPPSS---VQTPDSQPAPAVLKREDDPATSPPH 238
Query: 303 SLSRRQTGPLAP 338
+RR LAP
Sbjct: 239 GHARRSPESLAP 250
>09_06_0370 -
22610441-22610569,22610659-22611060,22611141-22611191,
22611475-22611700,22612219-22612289,22612411-22612530,
22612618-22612812,22612995-22613059,22613306-22613396,
22613611-22613672,22613796-22613846,22614326-22614427,
22614876-22614939,22615104-22615247
Length = 590
Score = 28.3 bits (60), Expect = 7.6
Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = -1
Query: 459 EDSNTHRHLTEFVG-LDLEMSFKQHYHEVLDTIGGTFTEMFRGLRDQFASEIATVGQQYR 283
E+S + HL +G + L QH V+ + T + D+ SE+ T+G++
Sbjct: 235 ENSPDYAHLASKMGSVYLAKLLSQHLEAVIKARIPSITSLINKTIDELESELDTIGKEVA 294
Query: 282 VEP 274
+P
Sbjct: 295 ADP 297
>03_02_0171 +
6126685-6127107,6127237-6127581,6127701-6127997,
6129763-6129990,6130716-6131036
Length = 537
Score = 28.3 bits (60), Expect = 7.6
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = +3
Query: 168 ESKASRPRRSDTHQLPSASGRPAETPASGEDPRI*RVPPGTVDPQSLSRRQTG-PLAPGT 344
E ++ R S +L ++GR + AS R+ ++PP +P R+ P+AP +
Sbjct: 175 EKESGRRAVSSRRELQRSNGRNFDRQASSLRRRLEKMPPADAEPCVKDIREIALPVAPQS 234
Query: 345 SP 350
P
Sbjct: 235 PP 236
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,173,816
Number of Sequences: 37544
Number of extensions: 505201
Number of successful extensions: 1698
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1695
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2209429392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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