Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc19b20
         (874 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0555 - 10588685-10592038                                         31   1.6  
08_02_0167 - 13564466-13566227,13566361-13566644,13566684-135675...    31   1.6  
10_07_0032 + 12096290-12097042,12097056-12098066,12110194-12110454     30   2.8  
10_04_0010 - 7487455-7489490,7489569-7489980                           30   2.8  
03_02_1029 - 13488535-13493037                                         30   2.8  

>09_02_0555 - 10588685-10592038
          Length = 1117

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 12/43 (27%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
 Frame = -3

Query: 578 IHYSSSELYISVHVQFWSNASVRNLTEFI--CFIC*KCKASFE 456
           IH  S+++Y+++  ++W  +  R + EF+  C +C + KA  +
Sbjct: 698 IHSGSTKMYLNLKEKYWWVSMKREIAEFVALCDVCQRVKAEHQ 740


>08_02_0167 -
           13564466-13566227,13566361-13566644,13566684-13567540,
           13567684-13567957,13567973-13568218
          Length = 1140

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
 Frame = -3

Query: 578 IHYSSSELYISVHVQFWSNASVRNLTEFI--CFIC*KCKASFE 456
           IH  S+++Y+ +  ++W  +  R +TEF+  C +C   KA  +
Sbjct: 748 IHPGSTKMYLDMKEKYWWVSMKREITEFVALCEVCQHVKAEHQ 790


>10_07_0032 + 12096290-12097042,12097056-12098066,12110194-12110454
          Length = 674

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 12/43 (27%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
 Frame = -3

Query: 578 IHYSSSELYISVHVQFWSNASVRNLTEFI--CFIC*KCKASFE 456
           IH  S+++Y+ +  ++W  +  R + EF+  C +C + KA  +
Sbjct: 279 IHPGSTKMYLDLKEKYWWVSMKREIAEFVALCDVCQRVKAEHQ 321


>10_04_0010 - 7487455-7489490,7489569-7489980
          Length = 815

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 12/43 (27%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
 Frame = -3

Query: 578 IHYSSSELYISVHVQFWSNASVRNLTEFI--CFIC*KCKASFE 456
           IH  S+++Y+ +  ++W  +  R + EF+  C +C + KA  +
Sbjct: 441 IHPGSTKMYLDLKEKYWWVSMKREIAEFVALCDVCQRVKAEHQ 483


>03_02_1029 - 13488535-13493037
          Length = 1500

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 12/43 (27%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
 Frame = -3

Query: 578  IHYSSSELYISVHVQFWSNASVRNLTEFI--CFIC*KCKASFE 456
            IH  S+++Y+ +  ++W  +  R + EF+  C +C + KA  +
Sbjct: 1081 IHPGSTKMYLDLKEKYWWVSMKREIAEFVALCDVCQRVKAEHQ 1123


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,457,474
Number of Sequences: 37544
Number of extensions: 325575
Number of successful extensions: 607
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 607
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)