Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc19b20
         (874 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE013599-1778|AAM71009.1|  975|Drosophila melanogaster CG30485-P...    32   1.2  
BT023496-1|AAY84896.1| 2042|Drosophila melanogaster LP04448p pro...    30   4.8  
AJ249115-1|CAB55772.1| 2050|Drosophila melanogaster microtubule ...    30   4.8  
AE014297-2141|AAF55269.2| 2049|Drosophila melanogaster CG5000-PA...    30   4.8  

>AE013599-1778|AAM71009.1|  975|Drosophila melanogaster CG30485-PA
           protein.
          Length = 975

 Score = 31.9 bits (69), Expect = 1.2
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
 Frame = +2

Query: 698 ITYNEFPYVITYKSCNW---NGDRRSLSSSKKYCLFDHCR 808
           I Y   P+    K  N+   NG ++ ++SS+K C  DHC+
Sbjct: 329 IAYENSPFYKAIKGTNYGSRNGKKKRVTSSEKKCYDDHCK 368


>BT023496-1|AAY84896.1| 2042|Drosophila melanogaster LP04448p
           protein.
          Length = 2042

 Score = 29.9 bits (64), Expect = 4.8
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +1

Query: 349 TISGGK*KLKDSIMAIYKYKIDIYKSLHYNY 441
           TISG K  LK+    + K+K+DI +S+  NY
Sbjct: 637 TISGRKPGLKEMNFQVLKFKLDIIRSVAENY 667


>AJ249115-1|CAB55772.1| 2050|Drosophila melanogaster microtubule
           associated protein protein.
          Length = 2050

 Score = 29.9 bits (64), Expect = 4.8
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +1

Query: 349 TISGGK*KLKDSIMAIYKYKIDIYKSLHYNY 441
           TISG K  LK+    + K+K+DI +S+  NY
Sbjct: 636 TISGRKPGLKEMNFQVLKFKLDIIRSVAENY 666


>AE014297-2141|AAF55269.2| 2049|Drosophila melanogaster CG5000-PA
           protein.
          Length = 2049

 Score = 29.9 bits (64), Expect = 4.8
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +1

Query: 349 TISGGK*KLKDSIMAIYKYKIDIYKSLHYNY 441
           TISG K  LK+    + K+K+DI +S+  NY
Sbjct: 637 TISGRKPGLKEMNFQVLKFKLDIIRSVAENY 667


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,793,710
Number of Sequences: 53049
Number of extensions: 604149
Number of successful extensions: 1072
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1057
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1072
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4229643912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)