Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc19b19
(843 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 330 1e-91
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 330 1e-91
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 207 2e-54
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 110 2e-25
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 46 5e-06
SPCP31B10.05 |||tyrosyl-DNA phosphodiesterase |Schizosaccharomyc... 28 1.9
SPAC1006.08 |etd1||ethanol-hypersensitive mutant protein |Schizo... 27 4.4
SPBC32F12.09 |rum1||CDK inhibitor Rum1|Schizosaccharomyces pombe... 27 4.4
SPAC227.18 |lys3|SPAC2F7.01|saccharopine dehydrogenase [NAD+, L-... 26 5.8
SPAC227.16c |||GINS complex subunit Psf3|Schizosaccharomyces pom... 26 5.8
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|... 26 7.7
SPBC1289.08 |||UDP-N-acetylglucosamine diphosphorylase |Schizosa... 26 7.7
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 26 7.7
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 330 bits (811), Expect = 1e-91
Identities = 150/226 (66%), Positives = 175/226 (77%)
Frame = -3
Query: 817 PRDDFKTRARYLTEKYEYDVTEARKIWCFGPEGTGPNILVDCSKGVQYLNEIKDSVVAGF 638
PRDDFK RAR + +++ +DVT+ARKIWCFGP+ TG N++VD +K V YLNEIKDSVVA F
Sbjct: 608 PRDDFKVRARIMADEFGWDVTDARKIWCFGPDTTGANVVVDQTKAVAYLNEIKDSVVAAF 667
Query: 637 QWAAKEGVMAEENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEP 458
WA+KEG M EENLR RFNI DV LH DAIHRGGGQIIPT RR +YA L A P + EP
Sbjct: 668 AWASKEGPMFEENLRSCRFNILDVVLHADAIHRGGGQIIPTARRVVYASTLLASPIIQEP 727
Query: 457 VYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSN 278
V+L EIQ E A+GGIY VLN++RGHVF E Q GTP++ +KAYLPVNESFGFT +LR
Sbjct: 728 VFLVEIQVSENAMGGIYSVLNKKRGHVFSEEQRVGTPLYNIKAYLPVNESFGFTGELRQA 787
Query: 277 TGGQAFPQCVFDHWQVLPGDPCEPQSKPYNVVQETRKRKGLKEGLP 140
T GQAFPQ VFDHW + GDP +P SKP +V E RKRKGLKE +P
Sbjct: 788 TAGQAFPQLVFDHWSPMSGDPLDPTSKPGQIVCEARKRKGLKENVP 833
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 330 bits (811), Expect = 1e-91
Identities = 150/226 (66%), Positives = 175/226 (77%)
Frame = -3
Query: 817 PRDDFKTRARYLTEKYEYDVTEARKIWCFGPEGTGPNILVDCSKGVQYLNEIKDSVVAGF 638
PRDDFK RAR + +++ +DVT+ARKIWCFGP+ TG N++VD +K V YLNEIKDSVVA F
Sbjct: 608 PRDDFKVRARIMADEFGWDVTDARKIWCFGPDTTGANVVVDQTKAVAYLNEIKDSVVAAF 667
Query: 637 QWAAKEGVMAEENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEP 458
WA+KEG M EENLR RFNI DV LH DAIHRGGGQIIPT RR +YA L A P + EP
Sbjct: 668 AWASKEGPMFEENLRSCRFNILDVVLHADAIHRGGGQIIPTARRVVYASTLLASPIIQEP 727
Query: 457 VYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSN 278
V+L EIQ E A+GGIY VLN++RGHVF E Q GTP++ +KAYLPVNESFGFT +LR
Sbjct: 728 VFLVEIQVSENAMGGIYSVLNKKRGHVFSEEQRVGTPLYNIKAYLPVNESFGFTGELRQA 787
Query: 277 TGGQAFPQCVFDHWQVLPGDPCEPQSKPYNVVQETRKRKGLKEGLP 140
T GQAFPQ VFDHW + GDP +P SKP +V E RKRKGLKE +P
Sbjct: 788 TAGQAFPQLVFDHWSPMSGDPLDPTSKPGQIVCEARKRKGLKENVP 833
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 207 bits (505), Expect = 2e-54
Identities = 95/207 (45%), Positives = 132/207 (63%), Gaps = 4/207 (1%)
Frame = -3
Query: 802 KTRARYLTEKYEYDVTEARKIWCFGPEGTGPNILVDCSKGVQY----LNEIKDSVVAGFQ 635
K + + + Y++D+ +R IW FGP+ G NIL D + LN +K+ + GFQ
Sbjct: 725 KRISEFFQKNYDWDLLASRSIWAFGPDDRGTNILRDDTLSTDVDKNVLNSVKEYIKQGFQ 784
Query: 634 WAAKEGVMAEENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPV 455
W +EG + +E +R V F + DV L + I+RGGGQIIPT RR Y+ LTA PRLMEPV
Sbjct: 785 WGTREGPLCDETIRNVNFRLMDVVLAPEQIYRGGGQIIPTARRVCYSSFLTASPRLMEPV 844
Query: 454 YLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNT 275
Y+ E+ P ++ IY +L RRRGHV ++ G+P+++V+A +PV +S GF DLR +T
Sbjct: 845 YMVEVHAPADSLPIIYDLLTRRRGHVLQDIPRPGSPLYLVRALIPVIDSCGFETDLRVHT 904
Query: 274 GGQAFPQCVFDHWQVLPGDPCEPQSKP 194
GQA Q VFDHWQV+PGDP + KP
Sbjct: 905 QGQAMCQMVFDHWQVVPGDPLDKSIKP 931
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 1000
Score = 110 bits (265), Expect = 2e-25
Identities = 70/223 (31%), Positives = 113/223 (50%), Gaps = 24/223 (10%)
Frame = -3
Query: 811 DDFKTRARYLTEKYEYDVTEARK----IWCFGPEGTGPNILVDCSKGVQYL--------- 671
+ F R L E+ D+ E + I FGP+ GPNIL D +K ++
Sbjct: 724 EKFYERLSKLLEEENSDLGELKNHLDSIIAFGPKRVGPNILFDKTKKMRDFRRQSDETKL 783
Query: 670 --NEIKDSVVAGFQWAAKEGVMAEENLRGV-----RFNIYDVTLHTDAIHRGG----GQI 524
+++ + VV FQ +G + E ++G+ +F+I D + + + GQ+
Sbjct: 784 IPSDLSEYVVTAFQLITHQGPLCAEPVQGICVSIDQFDISDDSEDSKLLTINNPQIPGQV 843
Query: 523 IPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPM 344
I + + L PRLM +Y C++Q +G +YGV+++RRG V +E GTP
Sbjct: 844 ISVVKESIRHGFLGWSPRLMLAMYSCDVQATSEVLGRVYGVVSKRRGRVIDEEMKEGTPF 903
Query: 343 FIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDP 215
FIVKA +PV ESFGF ++ T G A+PQ +F +++L +P
Sbjct: 904 FIVKALIPVVESFGFAVEILKRTSGAAYPQLIFHGFEMLDENP 946
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 46.4 bits (105), Expect = 5e-06
Identities = 30/125 (24%), Positives = 56/125 (44%)
Frame = -3
Query: 640 FQWAAKEGVMAEENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLME 461
F A K+G + ++ RF + D H ++ T L A P ++E
Sbjct: 619 FYEALKKGFLIGHPIKNCRFVLEDGAYHPVDSSELAFRL--ATISAFRTAFLQANPMVLE 676
Query: 460 PVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRS 281
P+ I P GG+ G L++R+ + + F ++A +P+N F +++D+R+
Sbjct: 677 PIMNVSITAPVEHQGGVIGNLDKRKATIVDSD--TDEDEFTLQAEVPLNSMFSYSSDIRA 734
Query: 280 NTGGQ 266
T G+
Sbjct: 735 LTKGK 739
>SPCP31B10.05 |||tyrosyl-DNA phosphodiesterase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 536
Score = 27.9 bits (59), Expect = 1.9
Identities = 30/139 (21%), Positives = 55/139 (39%), Gaps = 4/139 (2%)
Frame = -1
Query: 630 PLRKELWLKRICVVLDSTSMM*HSILMPSIEV-VAKSFQQLEDACTHVC*LLS--PVSWS 460
P K+ W CV L+ H+ + P+++V + + D+ + ++ PV+
Sbjct: 50 PQLKQTWQFNFCVDLNFLLENMHASVFPTVDVRITHGYDSKSDSLARLTAQMNHCPVNVK 109
Query: 459 LYIFVKFSVLK*LWXXXXXXXXXXXXTFSKSPRWQVHLCSL*RPTYLSMSRSVL-LPICV 283
LY SV +W S + +H +L P ++ MS+++ P+
Sbjct: 110 LY-----SVYVPMWGTHHSKIMVNFFK-DDSCQIVIHTANLVEPDWIGMSQAIFKTPLLY 163
Query: 282 PTPADRPSRSAYSTIGRSS 226
P D S S+ G S
Sbjct: 164 PKANDSLSTSSVPEYGNPS 182
>SPAC1006.08 |etd1||ethanol-hypersensitive mutant protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 391
Score = 26.6 bits (56), Expect = 4.4
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +2
Query: 458 RLHETGL-SS*QTCVQASSSCWNDLATTSMDGISMECYIIDVESNTTQI 601
++ ET L ++ Q + CW++L+TTS + + II + TT I
Sbjct: 191 QIQETSLGATTQEDESSDGICWDELSTTSPESSKVSEPIIQDNTQTTHI 239
>SPBC32F12.09 |rum1||CDK inhibitor Rum1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 230
Score = 26.6 bits (56), Expect = 4.4
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 722 LGAKAPNLTGFGNIVFVLFCKIPSAS 799
+G PNL GN +F L ++PS+S
Sbjct: 169 IGILPPNLNSIGNKMFSLKSRVPSSS 194
>SPAC227.18 |lys3|SPAC2F7.01|saccharopine dehydrogenase [NAD+,
L-lysine forming] |Schizosaccharomyces pombe|chr
1|||Manual
Length = 368
Score = 26.2 bits (55), Expect = 5.8
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +3
Query: 513 VVGMIWPPPLWMASVWSVTS*MLNLTPRKFSSAITPSLAA 632
V G+ PPPL + S+ + + + + FS A+ PSL A
Sbjct: 305 VKGVTTPPPLEVISIDHLPTLLPRESSEAFSEALIPSLLA 344
>SPAC227.16c |||GINS complex subunit Psf3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 166
Score = 26.2 bits (55), Expect = 5.8
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = +3
Query: 537 PLWMASVWSVTS*MLNLTPRKFSSAITPSLAAHWNPATTESLISLRY 677
P W+A V ++ S + P FSS + +L A+ N + + + Y
Sbjct: 43 PFWLAEVLAINSFVSIHMPAPFSSVVRNALKANPNSVSIRDITTHYY 89
>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
Orc4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 972
Score = 25.8 bits (54), Expect = 7.7
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = -3
Query: 754 EARKIWCFGPEGTGPNILVD--CSKGVQYLNE 665
E + GP G+G ++LVD S+ Q +NE
Sbjct: 574 EGNSVIIVGPRGSGKSVLVDDILSRAAQEINE 605
>SPBC1289.08 |||UDP-N-acetylglucosamine diphosphorylase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 475
Score = 25.8 bits (54), Expect = 7.7
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Frame = +3
Query: 726 GPKHQILRASVTSYSYFSVRY--RARVLKSSRGIH 824
G KH +LRA+ +Y YFS + +A + S+ IH
Sbjct: 318 GHKHLLLRAANIAYHYFSFDFLQKASLHSSTLPIH 352
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 25.8 bits (54), Expect = 7.7
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = -3
Query: 814 RDDFKTRARYLTEKYEYDVTEARKIWCFGPEGTGPNIL 701
R+ + Y + + VT ++ + FGP GTG +L
Sbjct: 510 RETVQMPVMYAEKFLRFGVTPSKGVLFFGPPGTGKTLL 547
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,737,503
Number of Sequences: 5004
Number of extensions: 83928
Number of successful extensions: 221
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 218
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -