Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc19b19
(843 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0017 + 18937774-18937864,18938505-18940945 334 5e-92
04_01_0103 + 1082077-1082167,1083037-1085477 332 3e-91
01_06_0662 + 30987187-30987277,30987825-30990214 306 2e-83
01_06_0548 - 30137139-30139196,30139279-30139691,30139822-30139912 299 2e-81
06_03_0715 - 23823427-23823525,23823616-23823822,23823907-238240... 228 4e-60
03_05_0511 + 25056018-25059107 109 2e-24
02_04_0148 - 20198407-20201424 102 4e-22
04_04_0640 - 26891552-26891725,26891814-26892326,26892698-268936... 55 8e-08
03_05_0044 + 20203644-20204054,20204695-20204916,20205092-202051... 50 3e-06
02_02_0474 + 10738476-10738797,10739568-10739677,10739891-107400... 38 0.013
11_06_0768 + 27129007-27129038,27129140-27129220,27129723-271300... 37 0.023
01_04_0109 + 16112581-16112934 32 0.50
04_01_0330 - 4369326-4370852 30 2.7
10_01_0323 + 3530246-3530446,3531091-3531726,3531860-3532018,353... 29 3.5
05_03_0498 - 14720989-14722119,14722225-14722839 29 3.5
06_03_0555 + 22080522-22080845,22081190-22081290,22081916-22082027 29 4.6
10_08_0621 + 19328357-19329545,19329967-19329986 28 8.1
10_01_0230 - 2433082-2434674 28 8.1
09_06_0142 - 21107878-21109104 28 8.1
>02_04_0017 + 18937774-18937864,18938505-18940945
Length = 843
Score = 334 bits (821), Expect = 5e-92
Identities = 150/223 (67%), Positives = 182/223 (81%)
Frame = -3
Query: 817 PRDDFKTRARYLTEKYEYDVTEARKIWCFGPEGTGPNILVDCSKGVQYLNEIKDSVVAGF 638
PRDD K R++ L+E++ +D A+KIWCFGPE TGPN++VD KGVQYLNEIKDSVVAGF
Sbjct: 609 PRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNEIKDSVVAGF 668
Query: 637 QWAAKEGVMAEENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEP 458
QWA+KEG +AEEN+RG+ F + DV LH DAIHRGGGQ+IPT RR +YA LTA+PRL+EP
Sbjct: 669 QWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEP 728
Query: 457 VYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSN 278
VYL EIQ PE A+GGIYGVLN++RGHVFEE Q GTP++ +KAYLPV ESFGF++ LR+
Sbjct: 729 VYLVEIQAPENALGGIYGVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSSQLRAA 788
Query: 277 TGGQAFPQCVFDHWQVLPGDPCEPQSKPYNVVQETRKRKGLKE 149
T GQAFPQCVFDHW ++ DP E S+ +VQ+ RKRKGLKE
Sbjct: 789 TSGQAFPQCVFDHWDMMTSDPLEAGSQASTLVQDIRKRKGLKE 831
>04_01_0103 + 1082077-1082167,1083037-1085477
Length = 843
Score = 332 bits (815), Expect = 3e-91
Identities = 149/223 (66%), Positives = 181/223 (81%)
Frame = -3
Query: 817 PRDDFKTRARYLTEKYEYDVTEARKIWCFGPEGTGPNILVDCSKGVQYLNEIKDSVVAGF 638
PRDD K R++ L+E++ +D A+KIWCFGPE TGPN++VD KGVQYLNEIKDSVVAGF
Sbjct: 609 PRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNEIKDSVVAGF 668
Query: 637 QWAAKEGVMAEENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEP 458
QWA+KEG +AEEN+RG+ F + DV LH DAIHRGGGQ+IPT RR +YA LTA+PRL+EP
Sbjct: 669 QWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEP 728
Query: 457 VYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSN 278
VYL EIQ PE A+GGIYGVLN++RGHVFEE Q GTP++ +KAYLPV ESFGF++ LR+
Sbjct: 729 VYLVEIQAPENALGGIYGVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSSQLRAA 788
Query: 277 TGGQAFPQCVFDHWQVLPGDPCEPQSKPYNVVQETRKRKGLKE 149
T GQAFPQCVFDHW ++ DP E S+ +V + RKRKGLKE
Sbjct: 789 TSGQAFPQCVFDHWDMMTSDPLEVSSQANQLVLDIRKRKGLKE 831
>01_06_0662 + 30987187-30987277,30987825-30990214
Length = 826
Score = 306 bits (751), Expect = 2e-83
Identities = 141/209 (67%), Positives = 170/209 (81%), Gaps = 2/209 (0%)
Frame = -3
Query: 817 PRDDFKTRARYLTEKYEYDVTEARKIWCFGPEGTGPNILVDCSKGVQYLNEIKDSVVAGF 638
PRDD K R++ L+E++ +D A+KIWCFGPE TGPNI+VD KGVQYLNEIKDSVVAGF
Sbjct: 605 PRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETTGPNIVVDMCKGVQYLNEIKDSVVAGF 664
Query: 637 QWAAKEGVMAEENLRG--VRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLM 464
QWA+KEG +AEEN+RG + F + DV LH+DAIHRGGGQIIPT RR +YA LTA+PRL+
Sbjct: 665 QWASKEGALAEENMRGRGICFEVCDVILHSDAIHRGGGQIIPTARRVIYAAQLTAKPRLL 724
Query: 463 EPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLR 284
EPVYL EIQ PE A+GGIY VLN++RGHVFEE Q GTP++ +KAYLPV ESFGFT+ LR
Sbjct: 725 EPVYLVEIQAPENALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFTSTLR 784
Query: 283 SNTGGQAFPQCVFDHWQVLPGDPCEPQSK 197
+ T GQAFP VFDHW++L DP EP ++
Sbjct: 785 AATSGQAFPLFVFDHWEMLSVDPLEPGTR 813
>01_06_0548 - 30137139-30139196,30139279-30139691,30139822-30139912
Length = 853
Score = 299 bits (734), Expect = 2e-81
Identities = 134/223 (60%), Positives = 169/223 (75%)
Frame = -3
Query: 817 PRDDFKTRARYLTEKYEYDVTEARKIWCFGPEGTGPNILVDCSKGVQYLNEIKDSVVAGF 638
P+DD K R + L+E++ +D A+KIW FGPE GPN+LVD KGVQYL+EIKDSVVAGF
Sbjct: 619 PKDDIKERGKILSEEFGWDKDLAKKIWAFGPETKGPNLLVDMCKGVQYLSEIKDSVVAGF 678
Query: 637 QWAAKEGVMAEENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEP 458
QWA+KEG +AEEN+RGV F + DVTLH+D+IHRGGGQ+IPT RR +YA LTA PRLMEP
Sbjct: 679 QWASKEGALAEENMRGVCFELCDVTLHSDSIHRGGGQLIPTARRAMYAAQLTASPRLMEP 738
Query: 457 VYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSN 278
+Y +IQ P+ AVG +YGVLN R G + EES+ GTP+ ++ YLPV +SF FT LR+
Sbjct: 739 MYQVDIQVPKTAVGNVYGVLNSRNGELVEESERTGTPLSNLRFYLPVAKSFDFTEKLRAE 798
Query: 277 TGGQAFPQCVFDHWQVLPGDPCEPQSKPYNVVQETRKRKGLKE 149
T GQAFPQC+F HWQ + DP + S+ V+ + RKRKGLK+
Sbjct: 799 TSGQAFPQCIFHHWQTMRSDPFQEGSEAAKVITDIRKRKGLKD 841
>06_03_0715 - 23823427-23823525,23823616-23823822,23823907-23824017,
23824124-23824322,23824410-23824495,23824940-23825098,
23825204-23825302,23825385-23826578,23826666-23826734,
23828042-23828812
Length = 997
Score = 228 bits (558), Expect = 4e-60
Identities = 114/229 (49%), Positives = 148/229 (64%), Gaps = 16/229 (6%)
Frame = -3
Query: 787 YLTEKYEYDVTEARKIWCFGPEGTGPNILVDCSKGVQY----LNEIKDSVVAGFQWAAKE 620
+ ++Y++DV AR IW FGPE GPNIL+D + V+ LN +KDS+V GFQW A+E
Sbjct: 741 FFRQRYQWDVLAARSIWAFGPEKQGPNILLDDTLSVEVDKNLLNAVKDSIVQGFQWGARE 800
Query: 619 GVMAEENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYLCEI 440
G + +E +R V+F I + + + +HRGGGQIIPT RR +Y+ L A PRLMEPVY EI
Sbjct: 801 GPLCDEPIRNVKFKILNANIAPEPLHRGGGQIIPTARRVVYSAFLMANPRLMEPVYYIEI 860
Query: 439 QCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAF 260
Q P V IY VL+RRRGHV + GTP+++VKA+LPV ESFGF DLR +T GQAF
Sbjct: 861 QTPIDCVSAIYTVLSRRRGHVTADVPKPGTPIYVVKAFLPVIESFGFETDLRYHTQGQAF 920
Query: 259 PQCVFDHWQVLPGD---------PCEP---QSKPYNVVQETRKRKGLKE 149
VFDHW ++PGD P EP Q + +TR+RKG+ E
Sbjct: 921 CLSVFDHWAIVPGDPLDKNIVLRPLEPAPIQHLAREFMVKTRRRKGMSE 969
>03_05_0511 + 25056018-25059107
Length = 1029
Score = 109 bits (263), Expect = 2e-24
Identities = 57/158 (36%), Positives = 86/158 (54%), Gaps = 8/158 (5%)
Frame = -3
Query: 664 IKDSVVAGFQWAAKEGVMAEENLRGVRFNI--YDVTLHTDAIHRG------GGQIIPTTR 509
+++ +V+GFQ A G + +E + G+ F + Y H+DA + GQ+I +
Sbjct: 815 LRNCIVSGFQLATNAGPLCDEPMWGLVFVVEPYIFCDHSDAANHSEQYNIFSGQVITAVK 874
Query: 508 RCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKA 329
++ +PRL+E +Y CE+ P +G Y VL+R+R V +E GT +F V A
Sbjct: 875 EACREAVVQNKPRLVEAMYFCELTTPTEQLGATYAVLSRKRARVLKEEMQEGTSLFTVHA 934
Query: 328 YLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDP 215
YLPV ES GF+ +LRS T G A V HW+ +P DP
Sbjct: 935 YLPVAESVGFSNELRSVTAGAASALLVLSHWEAIPEDP 972
>02_04_0148 - 20198407-20201424
Length = 1005
Score = 102 bits (244), Expect = 4e-22
Identities = 57/159 (35%), Positives = 78/159 (49%), Gaps = 9/159 (5%)
Frame = -3
Query: 664 IKDSVVAGFQWAAKEGVMAEENLRGVRFNIYDVTL---------HTDAIHRGGGQIIPTT 512
+K+S+ GFQ A G + E G+ F + L +D GQII
Sbjct: 790 VKNSIATGFQLATNAGPLCGEPTWGLIFLVKPYILPDSADASNNQSDHYSTFSGQIITAV 849
Query: 511 RRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVK 332
R A +L ++PRL+EP+Y CE+ P +G +Y VL R V +E GT +F V
Sbjct: 850 REACQAAILESKPRLVEPMYFCELTTPTEQLGSMYAVLGNCRARVLKEEMQEGTSLFTVH 909
Query: 331 AYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDP 215
AYL V ES F+ LR+ T G A F HW+ +P DP
Sbjct: 910 AYLSVAESSEFSKKLRNATAGAASALLAFSHWETVPQDP 948
>04_04_0640 - 26891552-26891725,26891814-26892326,26892698-26893644,
26893778-26894114,26894413-26894462,26895020-26895248
Length = 749
Score = 54.8 bits (126), Expect = 8e-08
Identities = 45/155 (29%), Positives = 68/155 (43%)
Frame = -3
Query: 688 KGVQYLNEIKDSVVAGFQWAAKEGVMAEENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTR 509
KG E V+ G + + GV+A + +R + D + H QI R
Sbjct: 580 KGGAVPKEYVPGVMKGIEESLPNGVLAGYPVVDLRAVLVDGSYHDVDSSVLAFQI--AAR 637
Query: 508 RCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKA 329
L A PRL+EP+ E+ PE +G + G LN RRG V G + +V A
Sbjct: 638 GAFREGLRKAGPRLLEPIMKVEVITPEEHLGDVIGDLNSRRGQVNSFGDKPG-GLKVVDA 696
Query: 328 YLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLP 224
++P+ E F + + LR T G+A + V+P
Sbjct: 697 FVPLAEMFQYVSTLRGMTKGRASYTMQLAKFDVVP 731
>03_05_0044 +
20203644-20204054,20204695-20204916,20205092-20205130,
20206275-20206396,20206489-20206639,20207892-20207963,
20208256-20208351,20208861-20208949,20209068-20209134,
20210197-20210235,20210369-20210429,20210572-20210681,
20210766-20210840,20210914-20210982,20213126-20213247,
20214682-20214807,20214897-20215017,20215133-20215233,
20215564-20215624,20216560-20216613,20217585-20217689
Length = 770
Score = 49.6 bits (113), Expect = 3e-06
Identities = 32/130 (24%), Positives = 58/130 (44%)
Frame = -3
Query: 655 SVVAGFQWAAKEGVMAEENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQ 476
++ GF+ A G + + +R + D H A+ + C A+
Sbjct: 613 AIEKGFKEACNSGSLIGHPVENIRIVLTDGASH--AVDSSELAFKLASIYAFRQCYAAAR 670
Query: 475 PRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFT 296
P ++EPV E++ P G + G +N+R+G + Q +V ++P+N FG++
Sbjct: 671 PVILEPVMKVELKVPTEFQGTVTGDMNKRKGIIVGNDQEGDDT--VVVCHVPLNNMFGYS 728
Query: 295 ADLRSNTGGQ 266
LRS T G+
Sbjct: 729 TALRSMTQGK 738
>02_02_0474 +
10738476-10738797,10739568-10739677,10739891-10740094,
10740400-10740576,10740659-10740811,10741535-10741624,
10741939-10742049,10742169-10742285,10742881-10743032,
10743116-10743200,10743597-10743691,10744211-10744376,
10744459-10744654,10745662-10745795
Length = 703
Score = 37.5 bits (83), Expect = 0.013
Identities = 20/89 (22%), Positives = 38/89 (42%)
Frame = -3
Query: 484 TAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESF 305
T +L EP + ++ PE +G + +L +RRG + + ++K +P
Sbjct: 497 TVDGKLQEPYEIAAVEVPEEYMGSVVELLGKRRGQMVDMQPSGPEGTTLLKYKIPTRGLI 556
Query: 304 GFTADLRSNTGGQAFPQCVFDHWQVLPGD 218
G + + + G A +FD + GD
Sbjct: 557 GLRNAVLTASRGTAILNTIFDSYGPWAGD 585
>11_06_0768 +
27129007-27129038,27129140-27129220,27129723-27130089,
27130165-27130255,27130515-27130595,27130764-27131830,
27132060-27132071,27132465-27133209,27133210-27135244,
27135712-27135787,27135925-27136029,27137080-27137166
Length = 1592
Score = 36.7 bits (81), Expect = 0.023
Identities = 18/52 (34%), Positives = 26/52 (50%)
Frame = -1
Query: 312 SRSVLLPICVPTPADRPSRSAYSTIGRSSLETRANLRASPTTLYRKRERGKD 157
S S +P +P P D PS+ +T G S+ +N SP+ +Y K G D
Sbjct: 19 STSARVPGVIPKPIDLPSQRGTATQGDKSMPPASNAWGSPSVMYPKNGGGSD 70
>01_04_0109 + 16112581-16112934
Length = 117
Score = 32.3 bits (70), Expect = 0.50
Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Frame = -1
Query: 315 MSRSVLLP--ICVPTPADRPSRSAYSTIGRSSLETRANLRASPTTLYRKRERGK 160
M+ VL P + +P+PA R R+ +T R++ +++ R PTT +R +G+
Sbjct: 1 MATEVLRPHNVLLPSPAQRRIRATAATHQRTANNHQSDARTKPTTAGSRRRQGR 54
>04_01_0330 - 4369326-4370852
Length = 508
Score = 29.9 bits (64), Expect = 2.7
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +3
Query: 516 VGMIWPPPLWMASVWSVTS 572
+G IWPPP+W S TS
Sbjct: 487 IGKIWPPPVWFKRCTSATS 505
>10_01_0323 +
3530246-3530446,3531091-3531726,3531860-3532018,
3532276-3532569,3557747-3557941,3558875-3559095,
3559190-3559373,3559797-3559973,3561319-3561824,
3561880-3562060
Length = 917
Score = 29.5 bits (63), Expect = 3.5
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +2
Query: 566 YIIDVESNTTQILFSHNSFLSGPLESSHNRVLNFIEVLNSFGAIHQ 703
Y I++ I+ S+N L G LES H+R L+ V A+H+
Sbjct: 644 YAINIAHRRVDIMDSNNYNLIGTLESDHHRALSKRIVKRLSDALHE 689
>05_03_0498 - 14720989-14722119,14722225-14722839
Length = 581
Score = 29.5 bits (63), Expect = 3.5
Identities = 17/47 (36%), Positives = 20/47 (42%)
Frame = -1
Query: 831 GSRESPAMTSRLALGILQKSTNTMLPKPVRFGALAPRVPAPTSWWIA 691
G RE SR L + L PV GAL PRV + W+A
Sbjct: 60 GGREHRPSGSRYVLAARRDGEEDGLRHPVPAGALVPRVTYRVAGWVA 106
>06_03_0555 + 22080522-22080845,22081190-22081290,22081916-22082027
Length = 178
Score = 29.1 bits (62), Expect = 4.6
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -1
Query: 750 PVRFGALAPRVPAPTSWWIAPKEFSTSMKLRTLLWLDSSGPLRK 619
P R PR+ PTS + P+E +T+ + W D G +R+
Sbjct: 58 PARLRVARPRIQRPTSSHVEPEEVTTASR-----WRDGRGSVRR 96
>10_08_0621 + 19328357-19329545,19329967-19329986
Length = 402
Score = 28.3 bits (60), Expect = 8.1
Identities = 17/49 (34%), Positives = 23/49 (46%)
Frame = -3
Query: 763 DVTEARKIWCFGPEGTGPNILVDCSKGVQYLNEIKDSVVAGFQWAAKEG 617
DVT +R+I P G G I + GV +L S+V F+W G
Sbjct: 322 DVTGSREIRMM-PFGAGRRICAGLNVGVMHLEYFVGSMVMEFEWKEVAG 369
>10_01_0230 - 2433082-2434674
Length = 530
Score = 28.3 bits (60), Expect = 8.1
Identities = 17/63 (26%), Positives = 27/63 (42%)
Frame = -3
Query: 763 DVTEARKIWCFGPEGTGPNILVDCSKGVQYLNEIKDSVVAGFQWAAKEGVMAEENLRGVR 584
D+T R+I P G G I +L ++VA F+W A EG + + +
Sbjct: 452 DITGTREIRMM-PFGAGRRICPGLGVATLHLEYFVANMVAAFEWRAAEGEAVDVDGEKLE 510
Query: 583 FNI 575
F +
Sbjct: 511 FTV 513
>09_06_0142 - 21107878-21109104
Length = 408
Score = 28.3 bits (60), Expect = 8.1
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +2
Query: 191 VGLALRFARVSREDLPMVEYALREGLS-AGVGTQIGSKTER 310
V L L++ E LP++ A REG++ AGV +GS R
Sbjct: 171 VDLGLKYGANPDEVLPLLRAAQREGVAVAGVSFHVGSGASR 211
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,635,471
Number of Sequences: 37544
Number of extensions: 617865
Number of successful extensions: 1817
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1745
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1813
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2338704516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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